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Add filter_seq (using mmseq2 and cd-hit) #524

Add filter_seq (using mmseq2 and cd-hit)

Add filter_seq (using mmseq2 and cd-hit) #524

Workflow file for this run

name: Unit Tests
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
test:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest]
python-version: ['3.9', '3.10', '3.11', '3.12']
steps:
- uses: actions/checkout@v4
- name: Cache Python dependencies
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-${{ matrix.python-version }}-
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install pytest
- name: Run Tests
run: pytest tests
env:
HYPOTHESIS_DEADLINE: 10000000
MPLBACKEND: Agg