Finish filter_seq #542
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip-${{ matrix.python-version }}- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest | |
| - name: Install cd-hit (Ubuntu) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cd-hit | |
| - name: Install mmseqs2 (Ubuntu) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y mmseqs2 | |
| - name: Install cd-hit (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install cd-hit # Example, you might need to provide a custom installation script if not available in Chocolatey | |
| - name: Install mmseqs2 (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install mmseqs2 # Example, you might need to provide a custom installation script if not available in Chocolatey | |
| - name: Run Tests | |
| run: pytest tests | |
| env: | |
| HYPOTHESIS_DEADLINE: 10000000 | |
| MPLBACKEND: Agg |