Update main.yml

breimanntools · Apr 8, 2024 · 21962c0 · 21962c0
1 parent 441eb31
commit 21962c0
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Showing 4 changed files with 11 additions and 10 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -41,7 +41,7 @@ jobs:
     - name: Run Tests
       run: pytest tests
       env:
-        HYPOTHESIS_DEADLINE: None
+        HYPOTHESIS_DEADLINE: 10000000
         MPLBACKEND: Agg
 
   code-quality:

diff --git a/README.rst b/README.rst
@@ -24,6 +24,10 @@ Welcome to the AAanalysis documentation!
    :target: https://github.com/breimanntools/aaanalysis/blob/master/LICENSE
    :alt: License
 
+.. |Documentation Status| image:: https://readthedocs.org/projects/aaanalysis/badge/?version=latest
+   :target: https://aaanalysis.readthedocs.io/en/latest/?badge=latest
+   :alt: Documentation Status
+
 .. |CI/CD pipeline| image:: https://github.com/breimanntools/aaanalysis/actions/workflows/main.yml/badge.svg
    :target: https://github.com/breimanntools/aaanalysis/actions/workflows/main.yml
    :alt: CI/CD Pipeline
@@ -36,9 +40,6 @@ Welcome to the AAanalysis documentation!
    :target: https://github.com/breimanntools/aaanalysis/actions
    :alt: CodeQL
 
-.. |Documentation Status| image:: https://readthedocs.org/projects/aaanalysis/badge/?version=latest
-   :target: https://aaanalysis.readthedocs.io/en/latest/?badge=latest
-   :alt: Documentation Status
 
 .. |Conda Version| image:: https://anaconda.org/conda-forge/aaanalysis/badges/version.svg
    :target: https://anaconda.org/conda-forge/aaanalysis

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,5 +1,5 @@
 [build-system]
-requires = ["poetry-core"]
+requires = ["poetry-core>=1.0.0"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
@@ -59,7 +59,7 @@ scipy = "^1.10.0"
 seaborn = "^0.11.2"
 six = "^1.16.0"
 statsmodels = "^0.13.2"
-threadpoolctl = "^3.1.0
+threadpoolctl = "^3.1.0"
 
 # Additional depdencies (professional)
 # Install via pip install aaanalysis[pro]
@@ -72,10 +72,6 @@ pro = [
     "UpSetPlot>=0.8.0"
 ]
 
-[build-system]
-requires = ["poetry-core>=1.0.0"]
-build-backend = "poetry.core.masonry.api"
-
 # Project URLs
 [tool.poetry.urls]
 "Repository" = "https://github.com/breimanntools/aaanalysis"

diff --git a/tests/unit/aaclust_tests/test_aaclust_eval.py b/tests/unit/aaclust_tests/test_aaclust_eval.py
@@ -10,6 +10,7 @@
 import warnings
 import pytest
 
+
 # Helper function
 def check_invalid_conditions(X, labels=None):
     n_samples, n_features = X.shape
@@ -29,6 +30,7 @@ def check_invalid_conditions(X, labels=None):
             return True
     return False
 
+
 # Main function
 class TestAAclustEvaluate:
     """Test evaluate function of the TARGET FUNCTION"""
@@ -74,6 +76,7 @@ def test_labels_none(self):
         with pytest.raises(ValueError):
             aa.AAclust().eval(X)
 
+    @settings(deadline=1000)
     @given(X=npst.arrays(dtype=np.float64, shape=npst.array_shapes(min_dims=2, max_dims=2, min_side=10, max_side=50),
                          elements=some.floats(allow_nan=False, allow_infinity=False, min_value=1)),
         labels_length=some.integers(min_value=10, max_value=50))
@@ -134,6 +137,7 @@ def test_evaluate_large_dataset(self, X, labels):
                 warnings.simplefilter("ignore", RuntimeWarning)
                 assert isinstance(aa.AAclust().eval(X, list_labels=labels), pd.DataFrame)
 
+    @settings(deadline=1000)
     @given(X=npst.arrays(dtype=np.float64, shape=npst.array_shapes(min_dims=2, max_dims=2, min_side=1, max_side=2),
                          elements=some.floats(allow_nan=False, allow_infinity=False)))
     def test_small_X(self, X):