Change numpy dependecy to <2.0.0 due to errors in other dependent pac…

…kages

aaanalysis/_utils/plotting.py

@@ -251,7 +251,7 @@ def plot_legend_(ax=None, dict_color=None, list_cat=None, labels=None,
     handles = [_create_marker(dict_color[cat], labels[i], marker[i], marker_size[i],
                               lw, edgecolor, linestyle[i], hatch[i], hatchcolor)
                for i, cat in enumerate(list_cat)]
-    legend = ax.legend(handles=handles, labels=labels, **args)
+    legend = ax.legend(handles=handles, **args)
     if title_align_left:
         legend._legend_box.align = "left"
     return ax

pyproject.toml

@@ -44,7 +44,7 @@ Jinja2 = "^3.1.2"
 joblib = "^1.2.0"
 kiwisolver = "^1.4.4"
 matplotlib = "^3.5.3"
-numpy = "^1.24.4"
+numpy = ">=1.24.4,<2.0.0"
 openpyxl = "^3.0.10"
 packaging = "^21.3"
 pandas = "^2.0.0"

requirements.txt

@@ -9,7 +9,7 @@ Jinja2>=3.1.2
 joblib>=1.2.0
 kiwisolver>=1.4.4
 matplotlib>=3.5.3
-numpy>=1.24.4
+numpy>=1.24.4,<2.0.0
 openpyxl>=3.0.10
 packaging>=21.3
 pandas>=2.0.0

tests/unit/plotting_tests/test_plot_legend.py

@@ -174,7 +174,9 @@ def test_plot_set_legend_n_cols(self, n_cols):
     def test_plot_set_legend_custom_labels(self, labels):
         fig, ax = plt.subplots()
         labels = list(set([x.replace("_", "X") for x in labels if len(x) > 1]))
+        # Use the plot_legend function to create the legend
         ax = aa.plot_legend(ax=ax, dict_color={label: "red" for label in labels})
+        # Extract and verify the legend labels
         legend_labels = [text.get_text() for text in ax.get_legend().get_texts()]
         assert set(legend_labels) == set(labels)
 

tests/valid_path_out.fasta

@@ -1,2 +1,2 @@
->DB001Bid1BinfoBinfoBinfo
+>DB001KATCGKinfoKinfo
 ATCG