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breimanntools committed Jul 3, 2024
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Release notes
=============

Version 1.0 (Alpha Version)
Version 1.0 (Stable Version)
--------------------------

v1.0.0 (2024-07-01)
--------------------------------

Added
~~~~~
- **SequencePreprocessor**: A utility data preprocessing class (data handling module.
- **SequencePreprocessor**: A utility data preprocessing class (data handling module).
- **comp_seq_sim**: A function for computing pairwise sequence similarity (data handling module).
- **filter_seq**: A function for redundancy-reduction of sequences (data handling module).
- **options**: Juxta Middle Domain (JMD) length can now be globally adjusted using the **jmd_n/c_len** options.

Changed
~~~~~~~
- **ShapModel**: The **ShapExplainer** class has been renamed to **ShapModel** for consistency with the **TreeModel**
class and to avoid confusion with tje ShapExplainer models from the
class and to avoid confusion with the ShapExplainer models from the
`SHAP <https://shap.readthedocs.io/en/latest/index.html>`_ package.
- **Requirements**: Biopython is now a required dependency only for the **aaanalysis[pro]** version.
- **Module Renaming**: The **Perturbation** module has been renamed to **Protein Design** module
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