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README spacing
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brianstock committed Mar 10, 2016
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Expand Up @@ -25,17 +25,22 @@ The MixSIAR package can be run as a GUI with `mixsiar_gui()`, or as a sequence o
1. Download and install [JAGS]:http://mcmc-jags.sourceforge.net/
2. Open R.
3. Install GTK+ dependent packages. You will be prompted to install GTK+. **Follow the automatic prompts and do not interrupt the GTK+ installation!**:

```
install.packages(c("gWidgets", "RGtk2", "gWidgetsRGtk2", "devtools"))
```

4. Restart R and run:

```
library(devtools)
devtools::install_github("brianstock/MixSIAR",
dependencies = TRUE,
build_vignettes = TRUE)
```

5. Load MixSIAR and run GUI:

```
library(MixSIAR)
mixsiar_gui()
Expand All @@ -46,41 +51,51 @@ The MixSIAR package can be run as a GUI with `mixsiar_gui()`, or as a sequence o
1. Download and install [JAGS]:http://mcmc-jags.sourceforge.net/
2. Open R.
3. Install GTK+ dependent R packages:

```
install.packages(c("gWidgets", "RGtk2", "gWidgetsRGtk2", "devtools"))
```

4. Close R.
5. Download and install the newest GTK+ framework: http://r.research.att.com/#other.
6. Install the latest X11 application (xQuartz): http://xquartz.macosforge.org/landing/.
7. Open R and run:

```
library(devtools)
devtools::install_github("brianstock/MixSIAR",
dependencies = TRUE,
build_vignettes = TRUE)
```
8. Load MixSIAR and run GUI:

```
library(MixSIAR)
mixsiar_gui()
```

#### Linux

1. Download and install [JAGS]:http://mcmc-jags.sourceforge.net/. Alternatively, `sudo apt-get install jags r-cran-rjags`.2. Download and install GTK+. From the terminal: `sudo apt-get install libgtk2.0-dev`. You can also see http://www.gtk.org/download/index.php.
3. Check if GTK+ is installed correctly. Open R, install and load the `RGtk2` package with:

```
install.packages("RGtk2")
library(RGtk2)
```

4. Install and load devtools, then install MixSIAR:

```
install.packages("devtools")
library(devtools)
devtools::install_github("brianstock/MixSIAR",
dependencies = TRUE,
build_vignettes = TRUE)
```

5. Load MixSIAR and run GUI:

```
library(MixSIAR)
mixsiar_gui()
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