update name dynamic_biomatrix to dynamic_biosphere_matrix

bw_timex/dynamic_biosphere_builder.py

@@ -128,7 +128,7 @@ def build_dynamic_biosphere_matrix(
 
         Returns
         -------
-        dynamic_biomatrix : scipy.sparse.csr_matrix
+        dynamic_biosphere_matrix : scipy.sparse.csr_matrix
             A sparse matrix with the dimensions (bio_flows at a specific time step) x (processes).
         """
 
@@ -273,10 +273,10 @@ def build_dynamic_biosphere_matrix(
         else:
             ncols = len(self.activity_time_mapping_dict)
         shape = (max(self.rows) + 1, ncols)
-        dynamic_biomatrix = sp.coo_matrix((self.values, (self.rows, self.cols)), shape)
-        self.dynamic_biomatrix = dynamic_biomatrix.tocsr()
+        dynamic_biosphere_matrix = sp.coo_matrix((self.values, (self.rows, self.cols)), shape)
+        self.dynamic_biosphere_matrix = dynamic_biosphere_matrix.tocsr()
 
-        return self.dynamic_biomatrix, temporal_market_lci_dict
+        return self.dynamic_biosphere_matrix, temporal_market_lci_dict
 
     def demand_from_timeline(self, row, original_db):
         """

dev/Example_long_timeline_dev_version.ipynb

@@ -629,7 +629,7 @@
     }
    ],
    "source": [
-    "tlca.dynamic_biomatrix"
+    "tlca.dynamic_biosphere_matrix"
    ]
   },
   {
@@ -829,7 +829,7 @@
     }
    ],
    "source": [
-    "tlca.dynamic_biomatrix"
+    "tlca.dynamic_biosphere_matrix"
    ]
   },
   {

tests/conftest.py

@@ -1,4 +1,4 @@
-from .fixtures.dynamic_biomatrix_db_fixture import dynamic_biomatrix_db
+from .fixtures.dynamic_biosphere_matrix_db_fixture import dynamic_biosphere_matrix_db
 from .fixtures.nonunitary_db_fixture import nonunitary_db
 from .fixtures.process_at_base_database_time_db_fixture import (
     process_at_base_database_time_db,

tests/fixtures/dynamic_biomatrix_db_fixture.py

@@ -7,8 +7,8 @@
 
 @pytest.fixture
 @bw2test
-def dynamic_biomatrix_db():
-    bd.projects.set_current("__test_dynamic_biomatrix__")
+def dynamic_biosphere_matrix_db():
+    bd.projects.set_current("__test_dynamic_biosphere_matrix__")
     bd.Database("bio").write(
         {
             ("bio", "CO2"): {

tests/test_dynamic_biomatrix_construction.py

@@ -9,12 +9,12 @@
 
 
 # make sure the test db is loaded
-def test_dynamic_biomatrix_fixture(dynamic_biomatrix_db):
+def test_dynamic_biosphere_matrix_fixture(dynamic_biosphere_matrix_db):
     assert len(bd.databases) == 3
 
 
-@pytest.mark.usefixtures("dynamic_biomatrix_db")
-class TestClass_dynamic_biomatrix:
+@pytest.mark.usefixtures("dynamic_biosphere_matrix_db")
+class TestClass_dynamic_biosphere_matrix:
 
     @pytest.fixture(autouse=True)
     def setup_method(self):
@@ -42,14 +42,14 @@ def test_identical_time_mapped_producers_exist_in_timeline(self):
         duplicates = self.tlca.timeline["time_mapped_producer"].duplicated().any()
         assert duplicates, "No duplicates found in column time_mapped_producer"
 
-    def test_dynamic_biomatrix_for_multiple_identical_time_mapped_producers_in_timeline(
+    def test_dynamic_biosphere_matrix_for_multiple_identical_time_mapped_producers_in_timeline(
         self,
     ):
 
-        expected_dynamic_biomatrix_as_array = np.array(
+        expected_dynamic_biosphere_matrix_as_array = np.array(
             [[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 1.5]]
         )  # 1.5 CO2 is only added once for the time_mapped producer, depsite it occuring twice in the timeline! Before #78, it was added twice , resulting in 3.0
 
         assert np.array_equal(
-            self.tlca.dynamic_biomatrix.toarray(), expected_dynamic_biomatrix_as_array
+            self.tlca.dynamic_biosphere_matrix.toarray(), expected_dynamic_biosphere_matrix_as_array
         ), "Arrays are not equal"