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without bam file #51

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BenxiaHu opened this issue May 13, 2021 · 0 comments
Open

without bam file #51

BenxiaHu opened this issue May 13, 2021 · 0 comments

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@BenxiaHu
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hello,
Thanks for developing ABC model which is a great algorithm predicting enhancer target genes.
I just have ChIP-seq and ATAC-seq bigwig files. For calling peak, I can convert these bigwig files to bedgraph or bed files. but for the remaining steps, such as Call candidate regions and Quantifying Enhancer Activity, does ABC model take as input these bigwig/bed/bedgraph files?
best,

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