Skip to content

Issues: broadinstitute/ABC-Enhancer-Gene-Prediction

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 84 Closed
19 Open 84 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

--hic_gamma and --hic_scale parameter for ENCFF621AIY.hic
#239 opened Sep 29, 2024 by L1angyan
1
Can not make the juice dump HiC data for chr9 on K562_combined_30.hic with resolution lower than 25000
#238 opened Sep 14, 2024 by nttg8100
silencer
#236 opened Sep 4, 2024 by tan5251
Duplicate score_column in predict.py
#235 opened Aug 27, 2024 by nttg8100
1
Where can i find the Reference files for the mouse Reference genome mm10
#232 opened Aug 6, 2024 by mano2991
qnrom in config.yaml for different cells
#231 opened Aug 3, 2024 by JasonLinjc
1
Quantile normalization
#230 opened Jul 10, 2024 by engreitz
@argschwind
predict.py
#228 opened Jun 24, 2024 by BERICP01
Difference between EnhancerPredictionsFull_threshold0.02_self_promoter.tsv and EnhancerPredictions_threshold0.02_self_promoter.tsv
#223 opened May 10, 2024 by NicoleYY77
3
promoter-promoter and enh-promoter interactions
#72 opened Nov 26, 2022 by Abeer-hes
Is it possible for you to add .bigwig as inputfile format option for Quantifying Enhancer Activity?
#71 opened Oct 6, 2022 by ezioljj
Refseq gene list
#61 opened Oct 14, 2021 by yussufhajjaj
3
Replicates
#58 opened Jul 16, 2021 by szhang0112
where to download mm10 curated TSS
#55 opened Jun 25, 2021 by cindy264
without bam file
#51 opened May 13, 2021 by BenxiaHu
3 questions about code usage (white list and bioreplicates)
#44 opened Dec 1, 2020 by sdjebali
1
Extend availability of reference files to other genomes?
#39 opened Oct 8, 2020 by connorrogerson
3
bamcompare input corrected chipseq file
#30 opened Aug 22, 2020 by girdhar3
1
what's the preferred setting when mean associated enhancers is lower than 2 ?
#29 opened Aug 20, 2020 by lmangnier
1
ProTip! Exclude everything labeled bug with -label:bug.