add arg

broadinstitute · Feb 3, 2025 · 192c223 · 192c223
1 parent 2ef15b1
commit 192c223
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/depmapomics/tasks/vcf_to_depmap.py b/depmapomics/tasks/vcf_to_depmap.py
@@ -200,6 +200,7 @@ def main(args=None):
                 only_coding=True,
                 whitelist=whitelist,
                 drop_multi=True,
+                drop_clustered_events=True,
                 tokeep={**TOKEEP_BASE, **TOKEEP_ADD},
                 index=True,
                 version=version,
@@ -212,6 +213,7 @@ def main(args=None):
                 only_coding=True,
                 whitelist=whitelist,
                 drop_multi=True,
+                drop_clustered_events=True,
                 mode="a",
                 header=False,
                 tokeep={**TOKEEP_BASE, **TOKEEP_ADD},