drop clustered event filter in vcf_to_depmap

broadinstitute · Jan 24, 2025 · 7180ae7 · 7180ae7
1 parent 8d8e241
commit 7180ae7
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/depmapomics/tasks/vcf_to_depmap.py b/depmapomics/tasks/vcf_to_depmap.py
@@ -773,7 +773,6 @@ def drop_lowqual(
             | (vcf["slippage"] == "Y")
             | (vcf["strand_bias"] == "Y")
             | (vcf["weak_evidence"] == "Y")
-            | (vcf["clustered_events"] == "Y")
             | (vcf["base_qual"] == "Y")
         )
     )