read bed instead of csv

broadinstitute · Oct 30, 2024 · d97a336 · d97a336
1 parent e0450c8
commit d97a336
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/depmapomics/mutations.py b/depmapomics/mutations.py
@@ -424,7 +424,7 @@ def aggregateGermlineMatrix(
         for name, row in tqdm(
             sample_table_valid.iterrows(), total=len(sample_table_valid)
         ):
-            sample_mut = pd.read_csv(row[colname])
+            sample_mut = pd.read_csv(row[colname], sep="\t")
             if header == False:
                 all_muts.append(sample_mut)
                 header = True