VS-1422 Merge VAT changes in echo into ah_var_store #4640

Job	Run time
build and push gatk docker to artifacts	32m 27s
Validate script WDLs using womtools	1m 1s
Validate generated WDLs using womtools	13m 7s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	36m 28s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	36m 50s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	34m 30s
WDL test RUN_M2_WDL on cromwell	29m 2s
WDL test RUN_CNN_WDL on cromwell	28m 48s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	27m 14s
Java 17.0.6+10 build and test cloud	20m 56s
Java 17.0.6+10 build and test integration	32m 55s
Java 17.0.6+10 build and test unit	20m 35s
Java 17.0.6+10 test on docker integration	38m 26s
Java 17.0.6+10 test on docker unit	23m 30s
Java 17.0.6+10 test on docker variantcalling	34m 54s
Java 17.0.6+10 test on docker conda	30m 41s
	7h 21m 25s

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