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Build and Test GATK 4

Adding new argument to control variant output interval filtering. #4653

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Adding new argument to control variant output interval filtering.

Adding new argument to control variant output interval filtering. #4653

Run time

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Job Run time
Validate script WDLs using womtools
1m 15s
Validate generated WDLs using womtools
13m 58s
check if the environment has privileges
1s
build and push gatk docker to artifacts
17m 1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
24m 37s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 52s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
24m 48s
WDL test RUN_M2_WDL on cromwell
17m 4s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
13m 34s
Java 17.0.6+10 build and test cloud
17m 3s
Java 17.0.6+10 build and test integration
31m 57s
Java 17.0.6+10 build and test unit
20m 59s
Java 17.0.6+10 test on docker integration
39m 38s
Java 17.0.6+10 test on docker unit
22m 44s
Java 17.0.6+10 test on docker variantcalling
38m 16s
Java 17.0.6+10 test on docker conda
26m 16s
5h 37m 3s