Create tools for SV VCF cleaning #4736

Job	Run time
build and push gatk docker to artifacts	17m 32s
Validate generated WDLs using womtools	14m 15s
check if the environment has privileges	1s
Validate script WDLs using womtools	52s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 14s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	27m 25s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 22s
WDL test RUN_M2_WDL on cromwell	17m 13s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 27s
Java 17.0.6+10 build and test cloud	19m 28s
Java 17.0.6+10 build and test integration	34m 26s
Java 17.0.6+10 build and test unit	20m 50s
Java 17.0.6+10 test on docker integration	38m 32s
Java 17.0.6+10 test on docker unit	22m 53s
Java 17.0.6+10 test on docker variantcalling	31m 53s
Java 17.0.6+10 test on docker conda	25m 4s
	5h 33m 27s

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