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clean up
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meganshand committed Sep 12, 2024
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import htsjdk.variant.variantcontext.GenotypesContext;
import htsjdk.variant.variantcontext.VariantContext;
import htsjdk.variant.vcf.VCFCompoundHeaderLine;
import htsjdk.variant.vcf.VCFHeaderLine;
import htsjdk.variant.vcf.VCFInfoHeaderLine;
import org.apache.commons.lang3.StringUtils;
import org.broadinstitute.barclay.help.DocumentedFeature;
import org.broadinstitute.hellbender.engine.ReferenceContext;
import org.broadinstitute.hellbender.exceptions.GATKException;
import org.broadinstitute.hellbender.tools.walkers.annotator.AnnotationUtils;
import org.broadinstitute.hellbender.tools.walkers.annotator.InfoFieldAnnotation;
import org.broadinstitute.hellbender.tools.walkers.annotator.QualByDepth;
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