set masked position file as one file, not array of files

broadinstitute · Nov 24, 2023 · fa227f4 · fa227f4
1 parent 7995198
commit fa227f4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/detect_potential_cross_contamination.pl b/bin/detect_potential_cross_contamination.pl
@@ -277,11 +277,11 @@
 	{
 		push(@plate_map_files, @$input);
 	}
-	elsif(($input = read_in_string_argument("-3", "--masked-positions")) ne -1)
+	elsif(($input = read_in_string_argument("-3", "--masked-positions")) ne "-1")
 	{
 		$masked_positions_string = $input;
 	}
-	elsif(($input = read_in_input_files_argument("-4", "--masked-positions-file")) ne -1)
+	elsif(($input = read_in_input_file_argument("-4", "--masked-positions-file")) ne "-1")
 	{
 		$masked_positions_file = $input;
 	}