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updates
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mmorgantaylor committed Aug 21, 2024
1 parent 00c769a commit 73c6cbd
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12 changes: 1 addition & 11 deletions 3rd-party-tools/beagle/Dockerfile
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Expand Up @@ -16,15 +16,6 @@ WORKDIR /usr/gitc

# Install dependencies
RUN set -eux; \
# apk add --no-cache \
# bash \
# curl \
# findutils \
# gcc \
# jq \
# unzip \
# wget \
# ; \
apk add --no-cache \
autoconf \
automake \
Expand Down Expand Up @@ -55,9 +46,8 @@ RUN set -eux; \
cd ../; \
rm -r bcftools-${BCFTOOLS_VERSION}; \
rm bcftools-${BCFTOOLS_VERSION}.tar.bz2 \
;
; \
# Download Beagle jars
RUN \
# beagle runs phasing and imputation
curl -L https://faculty.washington.edu/browning/beagle/beagle.${BEAGLE_VERSION}.jar > beagle.${BEAGLE_VERSION}.jar \
; \
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2 changes: 1 addition & 1 deletion 3rd-party-tools/beagle/docker_build.sh
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Expand Up @@ -3,7 +3,7 @@ set -e

# Update version when changes to Dockerfile are made
DOCKER_IMAGE_VERSION=0.0.1
TIMESTAMP="wip-temp-20240301" # $(date +"%s")
TIMESTAMP=$(date +"%s")
DIR=$(cd $(dirname $0) && pwd)

# Registries and tags
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