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adding GTF to uns field of h5ad for optimus #154

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merged 7 commits into from
Jan 14, 2025

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ekiernan
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@ekiernan ekiernan commented Jan 8, 2025

This PR updates the h5ad scripts in the warp-tools docker (now version 2.6.0) to take in a string for the annotation GTF file path. This enables the script to put the GTF path into h5ad's unstructured metadata (adata.uns) so that users are aware of which GTF file was used for analysis. Since the GTF file is stored in cloud repositories, this enables the user to pull the exact GTF file if needed.

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ty!

@ekiernan ekiernan merged commit 05157c7 into develop Jan 14, 2025
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2 participants