Examples of running differential expression analyses

Contact: Caleb Lareau

Install

Both DESeq2 and limma-voom can be installed via Bioconudctor:

source("https://bioconductor.org/biocLite.R")
biocLite("limma")
biocLite("DESeq2")

Sample Analysis

Rscripts

More exahustive guides

On the Bioconductor website, more detailed vignettes are available for both tools. Find those here.

• DESeq2 vignette
• limma-voom vignette