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added patient similarity tab and basic patient table
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MaDoeb
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Oct 2, 2024
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213 changes: 213 additions & 0 deletions
213
src/pages/patientView/patientSimilarity/patientSimilarityTable.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,213 @@ | ||
| import * as React from 'react'; | ||
| import { observable } from 'mobx'; | ||
| import { PatientViewPageStore } from '../clinicalInformation/PatientViewPageStore'; | ||
| import { observer } from 'mobx-react'; | ||
| import { Link } from 'react-router-dom'; | ||
| import { Collapse } from 'react-bootstrap'; | ||
| import LazyMobXTable from '../../../shared/components/lazyMobXTable/LazyMobXTable'; | ||
| import LoadingIndicator from 'shared/components/loadingIndicator/LoadingIndicator'; | ||
| import { DefaultTooltip } from 'cbioportal-frontend-commons'; | ||
| import { Button } from 'react-bootstrap'; | ||
| import { IClinicalTrial } from 'cbioportal-utils'; | ||
| import { | ||
| SimilarPatient, | ||
| fetchPatientsPage, | ||
| } from 'shared/api/SimilarPatientsAPI'; | ||
| import { getServerConfig } from 'config/config'; | ||
|
|
||
| import { remoteData } from 'cbioportal-frontend-commons'; | ||
| import { sleep } from 'shared/lib/TimeUtils'; | ||
|
|
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| enum ColumnKey { | ||
| //patient_id: string; | ||
| //study_id: string; | ||
| //age: number; | ||
| //gender: string; | ||
| //name: string; | ||
| //cancertype: string; | ||
| STUDY = 'study', | ||
| NAME = 'name', | ||
| AGE = 'age', | ||
| GENDER = 'gender', | ||
| CANCERTYPE = 'cancertype', | ||
| } | ||
|
|
||
| interface PatientSimilarityProps { | ||
| store: PatientViewPageStore; | ||
| } | ||
|
|
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| class SimilarPatientEntry { | ||
| private id; | ||
| constructor(id: string) { | ||
| this.id = id; | ||
| } | ||
| get_id(): string { | ||
| return this.id; | ||
| } | ||
| } | ||
|
|
||
| class SimilarPatientTableComponent extends LazyMobXTable<SimilarPatient> {} | ||
|
|
||
| //@observer | ||
| //export class PatientSimilarityTable extends React.Component< | ||
| // PatientSimilarityProps, | ||
| // {} | ||
| //> { | ||
| // private readonly ENTRIES_PER_PAGE = 10; | ||
| // private _columns = [ | ||
| // { | ||
| // name: ColumnKey.PATIENTID, | ||
| // render: (patient: SimilarPatient) => ( | ||
| // <div> | ||
| // {patient.id} | ||
| // </div> | ||
| // ), | ||
| // width: 250, | ||
| // resizable: true, | ||
| // }, | ||
| // ]; | ||
| // | ||
| // @observable | ||
| // patients: SimilarPatientEntry[] = []; | ||
| // | ||
| // constructor(props: PatientSimilarityProps) { | ||
| // super(props); | ||
| // this.state = { | ||
| // | ||
| // }; | ||
| // } | ||
| // | ||
| // private current_page = 0; | ||
| // | ||
| // render() { | ||
| // return ( | ||
| // <div> | ||
| // <div style={{ padding: '3px' }}> | ||
| // <Button | ||
| // type="button" | ||
| // className={'btn btn-default'} | ||
| // > | ||
| // TEST | ||
| // </Button> | ||
| // </div> | ||
| // <div> | ||
| // <SimilarPatientTableComponent | ||
| // showCopyDownload={false} | ||
| // data={this.props.store.similarPatientsPage.result} // | ||
| // columns={this._columns} | ||
| // initialItemsPerPage={this.ENTRIES_PER_PAGE} | ||
| // /> | ||
| // </div> | ||
| // </div> | ||
| // ); | ||
| // } | ||
| //} | ||
|
|
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| const PatientSimilarityTable = (props: PatientSimilarityProps) => { | ||
| const [currentPage, setCurrentPage] = React.useState(0); | ||
| const [perPage, setPerPage] = React.useState(1); | ||
| const [totalPages, setTotalPages] = React.useState(2); | ||
| const [patients, setPatients] = React.useState<SimilarPatient[]>([]); | ||
|
|
||
| const _columns = [ | ||
| { | ||
| name: ColumnKey.STUDY, | ||
| render: (patient: SimilarPatient) => <div>{patient.study_id}</div>, | ||
| width: 250, | ||
| resizable: true, | ||
| }, | ||
| { | ||
| name: ColumnKey.NAME, | ||
| render: (patient: SimilarPatient) => <div>{patient.name}</div>, | ||
| width: 250, | ||
| resizable: true, | ||
| }, | ||
| { | ||
| name: ColumnKey.AGE, | ||
| render: (patient: SimilarPatient) => <div>{patient.age}</div>, | ||
| width: 250, | ||
| resizable: true, | ||
| }, | ||
| { | ||
| name: ColumnKey.GENDER, | ||
| render: (patient: SimilarPatient) => <div>{patient.gender}</div>, | ||
| width: 250, | ||
| resizable: true, | ||
| }, | ||
| { | ||
| name: ColumnKey.CANCERTYPE, | ||
| render: (patient: SimilarPatient) => ( | ||
| <div>{patient.cancertype}</div> | ||
| ), | ||
| width: 250, | ||
| resizable: true, | ||
| }, | ||
| ]; | ||
|
|
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| React.useEffect(() => { | ||
| function sleep(ms: number) { | ||
| return new Promise(resolve => setTimeout(resolve, ms)); | ||
| } | ||
|
|
||
| // fetch data | ||
| (async function() { | ||
| try { | ||
| const { patients, totalPages } = await fetchPatientsPage( | ||
| currentPage, | ||
| perPage | ||
| ); | ||
| await sleep(50); // sometimes the re-render would not be triggered when fetch was too fast... any ideas why this happens? | ||
|
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| //console.group('### TEST RELOAD PATIENTS ###'); | ||
| //console.log(patients) | ||
| //console.groupEnd(); | ||
|
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| setPatients(patients); | ||
| setTotalPages(totalPages); | ||
| } catch (error) { | ||
| console.error('Error fetching data:', error); | ||
| } | ||
| })(); | ||
| }, [currentPage, perPage]); | ||
|
|
||
| const handlePrevPage = () => { | ||
| if (currentPage > 0) { | ||
| setCurrentPage(currentPage - 1); | ||
| } | ||
| }; | ||
|
|
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| const handleNextPage = () => { | ||
| if (currentPage < totalPages) { | ||
| setCurrentPage(currentPage + 1); | ||
| } | ||
| }; | ||
|
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||
| return ( | ||
| <div> | ||
| {/* Display table */} | ||
| <div>{currentPage}</div> | ||
| <div>{JSON.stringify(patients)}</div> | ||
| <SimilarPatientTableComponent | ||
| showCopyDownload={false} | ||
| data={patients} // | ||
| columns={_columns} | ||
| initialItemsPerPage={perPage} | ||
| showFilter={false} | ||
| showPagination={false} | ||
| /> | ||
|
|
||
| {/* Pagination controls */} | ||
| <button onClick={handlePrevPage} disabled={currentPage === 0}> | ||
| Previous Page | ||
| </button> | ||
| <button | ||
| onClick={handleNextPage} | ||
| disabled={currentPage === totalPages - 1} | ||
| > | ||
| Next Page | ||
| </button> | ||
| </div> | ||
| ); | ||
| }; | ||
|
|
||
| export default PatientSimilarityTable; |
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