Update pre-commit and test

.github/workflows/test.yml

@@ -9,42 +9,60 @@ on:
     branches: [main]
 
 jobs:
-  test:
+  # Pre-commit runs once (not for each Python version)
+  pre-commit:
     runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ['3.10', '3.11', '3.12', '3.13']
     steps:
       - uses: actions/checkout@v6
       - name: Set up Python
         uses: actions/setup-python@v6
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: '3.12'
       - name: Set up uv
         uses: astral-sh/setup-uv@v7
         with:
           cache-dependency-glob: uv.lock
-
       - name: Sync dependencies
-        run: |
-          uv sync --locked --extra cpu --dev
-
+        run: uv sync --locked --extra cpu --dev
       - name: Cache pre-commit
         uses: actions/cache@v5
         with:
           path: ~/.cache/pre-commit/
-          key: pre-commit-${{ matrix.python-version }}-${{ hashFiles('.pre-commit-config.yaml') }}
-
+          key: pre-commit-3.12-${{ hashFiles('.pre-commit-config.yaml') }}
       - name: Run pre-commit checks
         run: uv run pre-commit run --all-files
         env:
           SKIP: no-commit-to-branch
+
+  # Tests run in parallel across Python versions
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ['3.10', '3.11', '3.12', '3.13']
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Set up Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Set up uv
+        uses: astral-sh/setup-uv@v7
+        with:
+          cache-dependency-glob: uv.lock
+
+      - name: Sync dependencies
+        run: uv sync --locked --extra cpu --dev
+
       - name: Run tests with coverage
-        run: |
-          uv run pytest --cov=city2graph --cov-report=xml
+        run: uv run pytest --cov=city2graph --cov-report=xml
+
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v5
         with:
-          token: ${{ secrets.CODECOV_TOKEN }}  # Set CODECOV_TOKEN in repository secrets
+          token: ${{ secrets.CODECOV_TOKEN }}
           files: coverage.xml
           fail_ci_if_error: true

.pre-commit-config.yaml

@@ -50,6 +50,6 @@ repos:
           - pandas-stubs
           - pytest
           - shapely
-          - torch
+          - types-torch
           - torch-geometric
           - types-requests