Fix tests diff by removing absolut path

It seems like currently report has been generated inside from container. But the test should work when run from any dev machine
cBioPortal · Apr 1, 2024 · c3c84fe · c3c84fe
1 parent d230a9c
commit c3c84fe
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/scripts/importer/validateData.py b/scripts/importer/validateData.py
@@ -957,7 +957,7 @@ def load_chromosome_lengths(reference_genome, logger):
                                     'downloadChromosomeSizes.py.')
 
         logger.debug("Retrieving chromosome lengths from '%s'",
-                     chrom_size_file)
+                     os.path.basename(chrom_size_file))
 
         try:
             chrom_size_dict = chrom_sizes[reference_genome]

diff --git a/tests/test_data/study_es_0/result_report.html b/tests/test_data/study_es_0/result_report.html
@@ -142,15 +142,15 @@ <h4 class="panel-title">General</h4>
                 <td><span class="glyphicon glyphicon-cog" aria-hidden="true"></span><span class="sr-only">Debug</span></td>
                 <td>&ndash;</td>
                 <td>&ndash;</td>
-                <td>Retrieving chromosome lengths from &#39;/cbioportal-core/src/main/resources/scripts/importer/chromosome_sizes.json&#39;</td>
+                <td>Retrieving chromosome lengths from &#39;chromosome_sizes.json&#39;</td>
                 <td>&ndash;</td>
                 <td></td>
               </tr>
               <tr class="info">
                 <td><span class="glyphicon glyphicon-cog" aria-hidden="true"></span><span class="sr-only">Debug</span></td>
                 <td>&ndash;</td>
                 <td>&ndash;</td>
-                <td>Retrieving chromosome lengths from &#39;/cbioportal-core/src/main/resources/scripts/importer/chromosome_sizes.json&#39;</td>
+                <td>Retrieving chromosome lengths from &#39;chromosome_sizes.json&#39;</td>
                 <td>&ndash;</td>
                 <td></td>
               </tr>
@@ -3192,4 +3192,4 @@ <h4 class="panel-title">Legend</h4>
     </div>
   </div>
 </body>
-</html>
+</html>