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cafferychen777/README.md

Chen Yang (Caffery) 🧬

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Caffery's GitHub stats

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R Python GitHub

About Me

I'm a PhD Student in Statistics at Texas A&M University, co-advised by Prof. Xianyang Zhang and Prof. Jun Chen at Mayo Clinic.

My research focuses on:

  • LLM4omics: Using Large Language Models for omics data analysis
  • LLMs for Productivity: Building tools to enhance daily workflows

Featured Tools

MicrobiomeStat · 29K+ Downloads

Comprehensive R package for microbiome and multi-omics analysis

ggpicrust2 · 100+ Citations

R package for PICRUSt2 visualization and analysis

LLMCal

LLM-powered tool that converts text into calendar events

Recent Highlights

  • 2025: ggpicrust2 paper reached 100 citations in Google Scholar
  • 2024: Awarded the Su Binghua Distinguished Biostatistics Scholarship
  • Published in Bioinformatics (2023)

Google Scholar Stats

Citations h-index i10-index Publications

Top Cited Papers

  • ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization. (2023, N/A) - 132 citations
  • The microbiome at the interface between environmental stress and animal health: an example from the most threatened vertebrate group (2024, N/A) - 1 citations

Connect with me

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  1. ggpicrust2 ggpicrust2 Public

    Make Picrust2 Output Analysis and Visualization Easier

    R 127 19

  2. qiime2 qiime2 Public

    Forked from qiime2/qiime2

    Official repository for the QIIME 2 framework.

    Python 1

  3. MicrobiomeStat MicrobiomeStat Public

    Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

    R 40 5

  4. MicrobiomeStat-Turtorial-Professional-Version MicrobiomeStat-Turtorial-Professional-Version Public

    MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome d…

    5 2

  5. MicrobiomeStat-Shiny MicrobiomeStat-Shiny Public

    A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.

    R 2 1

  6. awesome_spatial_omics awesome_spatial_omics Public

    Forked from crazyhottommy/awesome_spatial_omics

    tools and notes for spatial omics