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gjhuizing authored Apr 1, 2024
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[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![DOI](https://zenodo.org/badge/391909874.svg)](https://zenodo.org/badge/latestdoi/391909874)

Mowgli is a novel method for the integration of paired multi-omics data with any type and number of omics, combining integrative Nonnegative Matrix Factorization and Optimal Transport. [Read the preprint!](https://www.biorxiv.org/content/10.1101/2023.02.02.526825v2)
Mowgli is a novel method for the integration of paired multi-omics data with any type and number of omics, combining integrative Nonnegative Matrix Factorization and Optimal Transport. [Read the paper!](https://www.nature.com/articles/s41467-023-43019-2)

![figure](figure.png)

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sc.pl.umap(mdata)
```

## Our preprint
## Publication

```bibtex
@article{huizing2023paired,
title={Paired single-cell multi-omics data integration with Mowgli},
author={Huizing, Geert-Jan and Deutschmann, Ina Maria and Peyre, Gabriel and Cantini, Laura},
journal={bioRxiv},
pages={2023--02},
author={Huizing, Geert-Jan and Deutschmann, Ina Maria and Peyr{\'e}, Gabriel and Cantini, Laura},
journal={Nature Communications},
volume={14},
number={1},
pages={7711},
year={2023},
publisher={Cold Spring Harbor Laboratory}
publisher={Nature Publishing Group UK London}
}
```

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