SARS-CoV-2 Variant Analysis

This repository contains the files for a computational biology analysis project focused on SARS-CoV-2 variants. The project includes data visualization, variant sequence analysis, and a report detailing the spread and characteristics of COVID-19 variants worldwide.

Files

• ev01.Rmd: R Markdown file containing the full analysis and code for sequence processing, GC percentage calculation, and visualization.
• ev01.pdf: A rendered PDF report summarizing the findings from the analysis.

Project Overview

The analysis includes:

1. Current COVID-19 Situation: Global, national (Mexico), and regional insights.
2. Variant Investigation: Details on variants of concern and interest, including their characteristics and global distribution.
3. DNA Sequence Analysis: Processing and visualizing nucleotide sequences of multiple variants (e.g., Alpha, Beta, Delta).
4. Key Findings: Observations on GC content, sequence similarities, and potential areas for further study.

Tools and Libraries

This project uses:

• R
• Biostrings
• ggplot2
• seqinr

How to Use

1. Clone this repository:

   git clone https://github.com/carlosagalicia/SARS-CoV-2-Variant-Analysis.git