Update renv/activate.R manually

[csoneson]

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[github-actions]

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🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/carpentries-incubator/bioc-rnaseq/compare/md-outputs..md-outputs-PR-112

The following changes were observed in the rendered markdown documents:

 02-setup.md                                        |   4 +-
 03-import-annotate.md                              | 186 ++++-----
 04-exploratory-qc.md                               | 165 ++++----
 05-differential-expression.md                      |  70 ++--
 06-extra-design.md                                 | 240 +++++------
 07-gene-set-analysis.md                            | 443 +++++++++++----------
 data/GSE96870_se.rds                               | Bin 2411249 -> 2411249 bytes
 fig/04-exploratory-qc-rendered-pca-exercise-1.png  | Bin 14979 -> 14987 bytes
 ...erential-expression-rendered-heatmap-time-1.png | Bin 22608 -> 22602 bytes
 ...ne-set-analysis-rendered-compare-universe-1.png | Bin 112805 -> 112617 bytes
 fig/07-gene-set-analysis-rendered-hypergeom-1.png  | Bin 191056 -> 190999 bytes
 ...ne-set-analysis-rendered-more-enrichplots-1.png | Bin 275151 -> 267304 bytes
 ...ne-set-analysis-rendered-more-enrichplots-2.png | Bin 345475 -> 343562 bytes
 ...ene-set-analysis-rendered-plot-enrichment-1.png | Bin 147461 -> 144771 bytes
 ...et-analysis-rendered-plot-enrichment-padj-1.png | Bin 216907 -> 234997 bytes
 ...7-gene-set-analysis-rendered-plot-up-down-1.png | Bin 147374 -> 145413 bytes
 fig/07-gene-set-analysis-rendered-plot-z-1.png     | Bin 129533 -> 128771 bytes
 md5sum.txt                                         |  36 +-
 18 files changed, 596 insertions(+), 548 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2024-09-22 16:41:14 +0000