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cartesianpixels/README.md

Hey there, I'm Abdellah πŸ‘‹

Typing SVG

GitHub followers GitHub Stars Profile Views


🧬 About Me

class BioinformaticsResearcher:
    def __init__(self):
        self.name = "Abdellah"
        self.location = "Morocco πŸ‡²πŸ‡¦"
        self.education = {
            "current": "Master's in Biology & Health",
            "focus": "Biomedical Science",
            "next": "PhD in Bioinformatics & Computational Biology"
        }
        self.achievements = [
            "US State Department Student Leaders Alumni",
            "12-Month Bioinformatics Roadmap Creator",
            "Molecular Dynamics Simulation Expert"
        ]
        self.passion = "Biology, Aviation, Vexillology"
    
    def current_focus(self):
        return [
            "πŸ§ͺ Multi-omics Data Integration",
            "πŸ€– Machine Learning in Biology",
            "πŸ“Š Genomic Data Visualization",
            "πŸ”¬ Reproducible Research Workflows",
            "βš›οΈ Molecular Dynamics & Drug Design"
        ]

πŸš€ My Learning Journey

πŸ“ˆ 12-Month Bioinformatics Mastery Roadmap

🎯 Current Phase: [Your Current Phase]

gantt
    title My Bioinformatics Learning Timeline
    dateFormat  YYYY-MM-DD
    section Foundation
    Linux & Command Line     :done, phase1, 2024-01-01, 2024-01-31
    Python Programming       :done, phase2, 2024-02-01, 2024-02-28
    Data Science Basics      :active, phase3, 2024-03-01, 2024-03-31
    section Core Skills
    Genomics & NGS          :phase4, 2024-04-01, 2024-06-30
    Advanced Analysis       :phase5, 2024-07-01, 2024-09-30
    section Specialization
    ML & Systems Biology    :phase6, 2024-10-01, 2024-12-31
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Completed Milestones:

  • πŸ”„ Linux/Bash scripting proficiency
  • πŸ”„ Python for bioinformatics foundation
  • πŸ”„ Data science with NumPy/Pandas/R
  • ⏳ NGS analysis pipeline development

πŸ› οΈ Tech Stack & Tools

Programming Languages

Python R Bash SQL

Bioinformatics & Data Science

Biopython Bioconductor Pandas NumPy Scikit-learn TensorFlow

Molecular Modeling & Simulation

GROMACS SchrΓΆdinger PyMOL VMD

Tools & Platforms

Docker Git Jupyter Linux AWS


πŸ“Š GitHub Analytics

GitHub Activity Graph


πŸ”¬ Featured Projects

Air Assist AI Chatbot for Aviation naturaDock


🎯 Current Focus Areas

🧬 Research Interests

  • Multi-omics Integration: Combining genomics, transcriptomics, and proteomics data
  • Machine Learning in Biology: Applying AI for biomarker discovery and drug development
  • Molecular Dynamics Simulations: Protein-drug interactions and conformational analysis
  • Structure-Based Drug Design: Virtual screening and lead optimization using Maestro
  • Personalized Medicine: Pharmacogenomics and precision therapy approaches
  • Systems Biology: Network analysis and pathway modeling

πŸ“š Currently Learning

  • Advanced NGS analysis pipelines
  • Single-cell RNA-seq methods
  • Deep learning for biological sequences
  • Cloud computing for genomics (AWS/GCP)
  • Enhanced sampling methods in MD simulations
  • AI-driven drug discovery platforms

πŸŽ“ Academic Goals

  • 2024: Complete bioinformatics specialization
  • 2025: Advanced research opportunities
  • Future: Leading research in computational biology

🌐 Connect & Collaborate


πŸ’‘ Fun Facts & Interests

  • 🌍 Global Perspective: US State Department alumni bridging cultures through science
  • πŸŽ“ Academic Excellence: Pursuing cutting-edge research in computational biology
  • βš›οΈ Molecular Modeling Expert: Experienced with GROMACS and SchrΓΆdinger Maestro for drug design
  • 🀝 Collaboration: Always open to interdisciplinary projects and research partnerships
  • πŸ“ˆ Growth Mindset: Currently on a 12-month intensive bioinformatics learning journey
  • πŸ”¬ Research Vision: Making biology more predictable through computational approaches

πŸ“ˆ Learning Progress Tracker

9-Month Bioinformatics Roadmap Progress

Overall Progress

Phase Focus Area Progress Status
Phase 1 Linux & Command Line (Months 1-2) 20% πŸ”„ In Progress
Phase 2 Python Programming (Months 3-4) 0% ⏳ Upcoming
Phase 3 Data Science & Stats (Months 5-6) 0% ⏳ Upcoming
Phase 4 Bioinformatics Tools (Month 7) 0% ⏳ Upcoming
Phase 5 Machine Learning & AI (Month 8) 0% ⏳ Planned
Phase 6 Integration & Portfolio (Month 9) 0% ⏳ Final Phase

πŸš€ "I like flags, planes, and making cute apps for people I care about"

⭐ Star my repositories if you find them helpful! ⭐


Pinned Loading

  1. bioinformatics-portfolio bioinformatics-portfolio Public

    Portfolio of bioinformatics & data science projects, tracking 12-month learning & projects.

    1