change dockerfile #38
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| name: Build and Push Docker Images | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '*/**' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| app_dir: | |
| - si_kilosort25 | |
| - si_kilosort3 | |
| - si_mountainsort5 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Builder | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Log in to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| # username: YOUR_GITHUB_USERNAME # Replace with your GitHub username | |
| # password: ${{ secrets.GHCR_PAT }} # Use the PAT secret | |
| - name: Pip install dendro | |
| run: | | |
| python -m pip install --upgrade pip | |
| git clone https://github.com/flatironinstitute/dendro.git | |
| cd dendro/python | |
| git pull | |
| pip install . | |
| - name: Generate Spec File | |
| run: | | |
| cd ${{ matrix.app_dir }} | |
| chmod +x main.py | |
| dendro make-app-spec-file --app-dir . --spec-output-file spec.json | |
| - name: Build and push | |
| run: | | |
| docker build -f ${{ matrix.app_dir }}/Dockerfile -t ghcr.io/catalystneuro/dendro_${{ matrix.app_dir }}:latest . | |
| docker push ghcr.io/catalystneuro/dendro_${{ matrix.app_dir }}:latest | |
| - name: Commit files | |
| run: | | |
| git config --local user.email "github-actions[bot]@users.noreply.github.com" | |
| git config --local user.name "github-actions[bot]" | |
| GIT_STATUS=$(git status -s) | |
| [[ ! -z "$GIT_STATUS" ]] && git add ${{ matrix.app_dir }}/spec.json && git commit -m "update spec.json" -a || echo "No changes to commit" | |
| - name: Push changes | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} |