cleaner qm names

common/processor_pipeline.py

@@ -82,26 +82,21 @@ def run_pipeline(context: PipelineFullContext):
     run_postprocessing = context.run_postprocessing
     postprocessing_params = context.postprocessing_context.model_dump()
     qm_list = list()
-    if postprocessing_params['quality_metrics'].pop('presence_ratio'):
-        qm_list.append('presence_ratio')
-    if postprocessing_params['quality_metrics'].pop('snr'):
-        qm_list.append('snr')
-    if postprocessing_params['quality_metrics'].pop('isi_violation'):
-        qm_list.append('isi_violation')
-    if postprocessing_params['quality_metrics'].pop('rp_violation'):
-        qm_list.append('rp_violation')
-    if postprocessing_params['quality_metrics'].pop('sliding_rp_violation'):
-        qm_list.append('sliding_rp_violation')
-    if postprocessing_params['quality_metrics'].pop('amplitude_cutoff'):
-        qm_list.append('amplitude_cutoff')
-    if postprocessing_params['quality_metrics'].pop('amplitude_median'):
-        qm_list.append('amplitude_median')
-    if postprocessing_params['quality_metrics'].pop('nearest_neighbor'):
-        qm_list.append('nearest_neighbor')
-    if postprocessing_params['quality_metrics'].pop('nn_isolation'):
-        qm_list.append('nn_isolation')
-    if postprocessing_params['quality_metrics'].pop('nn_noise_overlap'):
-        qm_list.append('nn_noise_overlap')
+    qm_names = [
+        'presence_ratio',
+        'snr',
+        'isi_violation',
+        'rp_violation',
+        'sliding_rp_violation',
+        'amplitude_cutoff',
+        'amplitude_median',
+        'nearest_neighbor',
+        'nn_isolation',
+        'nn_noise_overlap'
+    ]
+    for qm_name in qm_names:
+        if postprocessing_params['quality_metrics'].pop(qm_name):
+            qm_list.append(qm_name)
     postprocessing_params['quality_metrics']['metric_names'] = qm_list
 
     # Curation params

si_mountainsort5/sample_context_1.yaml

@@ -1,11 +1,13 @@
 # https://api.dandiarchive.org/api/dandisets/000409/versions/draft/assets/c04f6b30-82bf-40e1-9210-34f0bcd8be24/
 input: https://dandiarchive.s3.amazonaws.com/blobs/2dd/3a3/2dd3a3b3-7ede-4f2b-a327-5c81bf5718da
 output: ./output/sorting_upload.nwb
+job_kwargs:
+  n_jobs: 0.7
 recording_context:
   electrical_series_path: /acquisition/ElectricalSeriesAp
   lazy_read_input: true
   stub_test: true
-  stub_test_duration_sec: 30
+  stub_test_duration_sec: 10
 run_preprocessing: true
 preprocessing_context:
   motion_correction: