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@cbib

Centre de Bioinformatique de Bordeaux

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  1. Seurat-Integrate Seurat-Integrate Public

    R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)

    R 16 3

  2. DeepSpot DeepSpot Public

    DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images

    Python 14 3

  3. MIX MIX Public

    MIX: Combining multiple assemblies from NGS data

    Python 13 7

  4. virhunter virhunter Public

    Deep Learning method for novel virus detection in sequencing data

    Python 9 2

  5. MICADo MICADo Public

    Looking for mutations in PacBio cancer data: an alignment-free method

    Python 8 2

  6. SalienceNet SalienceNet Public

    Forked from EdgarLefevre/SalienceNet

    Python 8

Repositories

Showing 10 of 18 repositories
  • Seurat-Integrate Public

    R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)

    R 16 3 2 0 Updated Mar 26, 2025
  • virhunter Public

    Deep Learning method for novel virus detection in sequencing data

    Python 9 2 1 0 Updated Mar 19, 2025
  • TrialMatchAI Public

    TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI

    Jupyter Notebook 8 1 0 0 Updated Jan 2, 2025
  • DeconvoliSTa Public
    R 0 0 0 0 Updated Oct 29, 2024
  • DIMet Public

    Differential analysis of targeted Isotope-labeled Metabolomics data

    Python 4 MIT 2 0 0 Updated Sep 23, 2024
  • ProteomX Public

    Statistical and Functional analysis and interpretation of proteomics data

    Python 0 MIT 1 28 6 Updated Sep 4, 2024
  • TraceGroomer Public

    Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.

    Python 1 MIT 1 0 0 Updated Aug 6, 2024
  • TempAI Public
    Python 1 0 0 0 Updated Jul 18, 2024
  • dypfish Public

    Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images

    Python 2 1 8 5 Updated Oct 3, 2023
  • SalienceNet Public Forked from EdgarLefevre/SalienceNet
    Python 8 MIT 1 0 0 Updated Jul 31, 2023
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