Newest biolinkml output + changes from dataset push

cbizon · Aug 20, 2019 · 0f73333 · 0f73333
1 parent a23f344
commit 0f73333
Show file tree

Hide file tree

Showing 73 changed files with 5,856 additions and 766 deletions.
diff --git a/Pipfile b/Pipfile
@@ -4,7 +4,7 @@ verify_ssl = true
 name = "pypi"
 
 [packages]
-biolinkml = ">=1.4.2"
+biolinkml = ">=1.4.5"
 
 [dev-packages]
 

diff --git a/Pipfile.lock b/Pipfile.lock
diff --git a/biolink-model.graphql b/biolink-model.graphql
@@ -719,6 +719,77 @@ type ConfidenceLevel
     systematicSynonym: [LabelType]
   }
 
+type DataFile
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+  }
+
+type DataSet
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+  }
+
+interface DataSetSummary
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+    title: String
+    sourceDataFile: DataFile
+    versionOf: DataSet
+    type: String
+    distribution: DistributionLevel
+    sourceWebPage: String
+  }
+
+type DataSetVersion
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+    title: String
+    sourceDataFile: DataFile
+    versionOf: DataSet
+    type: String
+    distribution: DistributionLevel
+  }
+
 type Device
   {
     id: IdentifierType!
@@ -838,6 +909,27 @@ interface DiseaseToThingAssociation
     edgeLabel: LabelType!
   }
 
+interface DistributionLevel
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+    title: String
+    sourceDataFile: DataFile
+    versionOf: DataSet
+    type: String
+    distribution: DistributionLevel
+    downloadURL: String
+  }
+
 type Drug
   {
     id: IdentifierType!
@@ -3517,6 +3609,23 @@ type SeverityValue
     subclassOf: [IriType]
   }
 
+type SourceFile
+  {
+    id: IdentifierType!
+    name: LabelType!
+    category: [IriType]!
+    relatedTo: [NamedThing]
+    interactsWith: [NamedThing]
+    nodeProperty: String
+    iri: IriType
+    synonym: [LabelType]
+    fullName: LabelType
+    description: NarrativeText
+    systematicSynonym: [LabelType]
+    sourceVersion: String
+    retrievedOn: Date
+  }
+
 interface SpecificityQuantifier
   {
   }