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- Remove plots from CovidTimelineCanadaPlots (#93)
- Add link to simple JavaScript dashboard (#12)
- Rename "Quick start guide" to "Getting started"
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jeanpaulrsoucy authored Dec 14, 2022
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Expand Up @@ -6,7 +6,9 @@ Datasets in this repository are found in the [`data`](https://github.com/ccodwg/

On April 30, 2022, `CovidTimelineCanada` superseded the original [`Covid19Canada`](https://github.com/ccodwg/Covid19Canada) dataset, which was first made available in March of 2020. For those familiar with the original dataset, please see [Transitioning from `Covid19Canada`](docs/transitioning_from_Covid19Canada.md).

## Quick start guide
A simple [dashboard](https://ccodwg.github.io/CovidTimelineCanada-js-dashboard/) is available to explore the data available in the Timeline of COVID-19 in Canada dataset.

## Getting started

We offer three groups of datasets: health region-level (`hr`), for case and death data only, province/territory-level (`pt`), for all data types, and Canada-level (`can`), for all data types. Because each province/territory has a different update schedule, the most recent date of data for each region is different; for the same reason, the Canada-level data are incomplete in [recent](https://github.com/ccodwg/CovidTimelineCanada/blob/main/data/can/cases_can_completeness.json) [days](https://github.com/ccodwg/CovidTimelineCanada/blob/main/data/can/deaths_can_completeness.json).

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The following datasets are available:

- Cases (`cases`)
- Deaths (`deaths`)
- Cases (`cases`) (health region or province/territory)
- Deaths (`deaths`) (health region or province/territory)
- Active hospitalizations (`hospitalizations`)
- Active ICU (`icu`)
- Tests completed (`tests_completed`)
Expand All @@ -52,7 +54,7 @@ The following datasets are available:

While we do our best to ensure comparability for the same metrics across different provinces/territories, some regions use different difinitions for the same metric (e.g., how COVID-19 deaths are defined). Reporting of a metric may also change over time in the same region. See [Detailed description of data sources](#detailed-description-of-data-sources) for more details.

For a summary plot of each dataset, see [Included datasets](#included-datasets).
For a summary plot of each dataset, see our [dashboard](https://ccodwg.github.io/CovidTimelineCanada-js-dashboard/).

## Data format

Expand Down Expand Up @@ -85,126 +87,6 @@ To contribute to this project, please refer to the ongoing discussions in the [i

We must also identify gaps in publicly available data. These data may then be requested from the relevant agencies or acquired via Access to Information requests (see [an example with Sasksatchewan's COVID-19 data](https://data.gripe/covid-19-in-saskatchewan/)).

## Included datasets

The following datasets are included in this repository:

* Cases by province/territory (`data/pt/cases_pt.csv`) and health region (`data/hr/cases_hr.csv`)
<details>
<summary><b>Plots</b> (click to expand)</summary>

![cases](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/cases_pt.png)
![cases](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/cases_hr.png)

</details>

* Deaths by province/territory (`data/pt/deaths_pt.csv`) and health region (`data/hr/deaths_hr.csv`)
<details>
<summary><b>Plots</b> (click to expand)</summary>

![deaths](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/deaths_pt.png)
![deaths](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/deaths_hr.png)

</details>

* Tests completed by province/territory (`data/pt/tests_completed_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![testing](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/tests_completed_pt.png)

</details>

* Hospitalizations (non-ICU and ICU) by province/territory (`data/pt/hospitalizations_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![hosp](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/hospitalizations_pt.png)

</details>

* ICU occupancy by province/territory (`data/pt/icu_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![icu](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/icu_pt.png)

</details>

* Vaccine coverage (dose 1) by province/territory (`data/pt/vaccine_coverage_dose_1_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_coverage_dose_1](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_coverage_dose_1_pt.png)

</details>

* Vaccine coverage (dose 2) by province/territory (`data/pt/vaccine_coverage_dose_2_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_coverage_dose_2](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_coverage_dose_2_pt.png)

</details>

* Vaccine coverage (dose 3) by province/territory (`data/pt/vaccine_coverage_dose_3_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_coverage_dose_3](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_coverage_dose_3_pt.png)

</details>

* Vaccine coverage (dose 4) by province/territory (`data/pt/vaccine_coverage_dose_4_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_coverage_dose_4](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_coverage_dose_4_pt.png)

</details>

* Vaccine administration (total doses) by province/territory (`data/pt/vaccine_administration_total_doses_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_administration_total_doses](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_administration_total_doses_pt.png)

</details>

* Vaccine administration (dose 1) by province/territory (`data/pt/vaccine_administration_dose_1_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_administration_dose_1](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_administration_dose_1_pt.png)

</details>

* Vaccine administration (dose 2) by province/territory (`data/pt/vaccine_administration_dose_2_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_administration_dose_2](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_administration_dose_2_pt.png)

</details>

* Vaccine administration (dose 3) by province/territory (`data/pt/vaccine_administration_dose_3_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_administration_dose_3](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_administration_dose_3_pt.png)

</details>

* Vaccine administration (dose 4) by province/territory (`data/pt/vaccine_administration_dose_4_pt.csv`)
<details>
<summary><b>Plot</b> (click to expand)</summary>

![vaccine_administration_dose_4](https://raw.githubusercontent.com/ccodwg/CovidTimelineCanadaPlots/main/plots/vaccine_administration_dose_4_pt.png)

</details>

Both the cumulative values (`value`) and the daily differences (`value_daily`) are given for each date where data are available.

## How these data are updated

The data in this repository are updated several times per day by [`Covid19CanadaBot`](https://github.com/ccodwg/Covid19CanadaBot) using the script [`update_data.R`](https://github.com/ccodwg/CovidTimelineCanada/blob/main/update_data.R).
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