Update of plotting routines #3
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load_atlantis_output replaced by load_atlantis_ncdf!
helper_functions added! This is a summary of "small" functions which
simplify computations for a lot of functions. In addition
helpfer_functions_user_defined stores those functions which depend on
user input (e.g. setting the boundary boxes).
get_ids_fishbase and extract_linf_k_from fishbase updated. They now work
with the package "XML" which results in a more robust extraction
procedure.
compare_atlantis allows automated creation of plots which compare
multiple ATLANTIS runs. In theory the number of runs is infinite but
should be limited due to storage capacity (RAM).
plot_atlantis allows plotting of single ATLANTIS runs.