Merge pull request pycaret#3987 from Smartappli/master

Workflows and dependencies update + python 3.12 support
celestinoxp · Aug 30, 2024 · 97649ad · 97649ad
2 parents 614bf41 + 207bf7c
commit 97649ad
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diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -0,0 +1,14 @@
+version: 2
+updates:
+  - package-ecosystem: "pip" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "daily"
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"  
+  - package-ecosystem: "docker"
+    directory: "/"
+    schedule:
+      interval: "daily"        
diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
@@ -31,11 +31,11 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v1
+      uses: github/codeql-action/init@v3
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -46,7 +46,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@v1
+      uses: github/codeql-action/autobuild@v3
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 https://git.io/JvXDl
@@ -60,4 +60,4 @@ jobs:
     #   make release
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v1
+      uses: github/codeql-action/analyze@v3
diff --git a/.github/workflows/lock_old_threads.yml b/.github/workflows/lock_old_threads.yml
@@ -15,7 +15,7 @@ jobs:
   action:
     runs-on: ubuntu-latest
     steps:
-      - uses: dessant/lock-threads@v4
+      - uses: dessant/lock-threads@v5
         with:
           issue-inactive-days: '30'
           pr-inactive-days: '3650'

diff --git a/.github/workflows/stale.yml b/.github/workflows/stale.yml
@@ -13,7 +13,7 @@ jobs:
       pull-requests: write
 
     steps:
-    - uses: actions/stale@v7
+    - uses: actions/stale@v9
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         stale-issue-message: 'Stale issue message: This issue will be automatically closed by GitHub Actions in 1 week if there is no further activity.'

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -20,47 +20,50 @@ jobs:
     name: Code quality checks
     steps:
       - name: Check out source repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Run black
         uses: psf/black@stable
         with:
           src: pycaret tests
-          version: 22.12.0
+          version: 24.8.0
       - name: Check imports
         uses: jamescurtin/isort-action@master
         with:
           sort-paths: pycaret tests
-          isort-version: 5.11.4
+          isort-version: 5.13.2
       - name: Run flake8
         uses: py-actions/flake8@v2
         with:
           path: pycaret tests
-          flake8-version: 6.0.0
+          flake8-version: 7.1.1
 
   # JOBS MUST START WITH test !!!!
   test_notebooks:
     runs-on: ubuntu-latest
     name: Test notebooks
     steps:
       - name: Check out source repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Set up Python environment
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.12"
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         run: |
-          pip install -U pytest pytest-xdist nbmake
+          python -m pip install --upgrade pip
+          python -m pip install uv
+          python -m uv pip install -U pytest pytest-xdist nbmake
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full]"
+          python -m uv pip install ".[full]"
           python -m ipykernel install --user --name cikernel
       - name: Python version and dependency list
         run: |
-          echo "Python version expected: 3.11"
+          echo "Python version expected: 3.12"
           python --version
           which python
           pip list
@@ -73,32 +76,34 @@ jobs:
       fail-fast: false
       matrix:
         os: [ 'ubuntu-latest', 'windows-latest' ]
-        python-version: [ '3.9', '3.10', '3.11' ]
+        python-version: [ '3.9', '3.10', '3.11', '3.12' ]
 
     defaults:
       run:
         shell: bash
 
     name: Python ${{ matrix.python-version }} on OS ${{ matrix.os }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v3
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         # SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL required due to
         # pyLDAvis 3.3.1 having an "sklearn" dependency
         run: |
           export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
           python -m pip install -U pip
-          python -m pip install -U pytest numpy
+          python -m pip install -U uv
+          python -m uv pip install -U pytest numpy
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full, test]"
+          python -m uv pip install ".[full, test]"
           if [ -f requirements-prophet.txt ]; then pip install -r requirements-prophet.txt; fi
       - name: Python version and dependency list
         run: |
@@ -114,28 +119,30 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     name: Test plotting
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         # SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL required due to
         # pyLDAvis 3.3.1 having an "sklearn" dependency
         run: |
           export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
           python -m pip install --upgrade pip
-          python -m pip install -U pytest numpy
+          python -m pip install uv
+          python -m uv pip install -U pytest numpy
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full, test]"
+          python -m uv pip install ".[full, test]"
       - name: Python version and dependency list
         run: |
           echo "Python version expected: ${{ matrix.python-version }}"
@@ -150,28 +157,30 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     name: Test random tuning
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         # SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL required due to
         # pyLDAvis 3.3.1 having an "sklearn" dependency
         run: |
           export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
           python -m pip install -U pip
-          python -m pip install -U pytest numpy
+          python -m pip install -U uv
+          python -m uv pip install -U pytest numpy
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full, test]"
+          python -m uv pip install ".[full, test]"
           if [ -f requirements-prophet.txt ]; then pip install -r requirements-prophet.txt; fi
       - name: Python version and dependency list
         run: |
@@ -187,28 +196,30 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     name: Test grid tuning
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         # SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL required due to
         # pyLDAvis 3.3.1 having an "sklearn" dependency
         run: |
           export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
           python -m pip install -U pip
-          python -m pip install -U pytest numpy
+          python -m pip install -U uv
+          python -m uv pip install -U pytest numpy
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full, test]"
+          python -m uv pip install ".[full, test]"
           if [ -f requirements-prophet.txt ]; then pip install -r requirements-prophet.txt; fi
       - name: Python version and dependency list
         run: |
@@ -224,28 +235,30 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     name: Benchmark tests
     steps:
       - uses: actions/checkout@v3
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip' # caching pip dependencies
       - name: Install dependencies
         # SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL required due to
         # pyLDAvis 3.3.1 having an "sklearn" dependency
         run: |
           export SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
           python -m pip install -U pip
-          python -m pip install -U pytest numpy
+          python -m pip install -U uv
+          python -m uv pip install -U pytest numpy
 
           # https://github.com/yaml/pyyaml/issues/736
           echo 'Cython < 3.0' > /tmp/constraint.txt
           PIP_CONSTRAINT=/tmp/constraint.txt pip wheel PyYAML==5.4.1
 
-          pip install ".[full, test]"
+          python -m uv pip install ".[full, test]"
           if [ -f requirements-prophet.txt ]; then pip install -r requirements-prophet.txt; fi
       - name: Python version and dependency list
         run: |

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -3,17 +3,17 @@ ci:
 
 repos:
   - repo: https://github.com/pycqa/isort
-    rev: 5.11.4
+    rev: 5.13.2
     hooks:
       - id: isort
         name: isort (python)
 
   - repo: https://github.com/pycqa/flake8
-    rev: 6.0.0
+    rev: 7.1.1
     hooks:
     -   id: flake8
 
   - repo: https://github.com/psf/black
-    rev: 23.3.0
+    rev: 24.8.0
     hooks:
       - id: black
diff --git a/Docker_files/pycaret_full/Dockerfile b/Docker_files/pycaret_full/Dockerfile
@@ -4,7 +4,7 @@ FROM jupyter/base-notebook:latest
 
 # name your environment and choose python 3.x version
 ARG conda_env=pycaret_full
-ARG py_ver=3.8
+ARG py_ver=3.11
 
 # add additional libraries you want with mamba 
 RUN mamba create --quiet --yes -p "${CONDA_DIR}/envs/${conda_env}" python=${py_ver} ipython ipykernel && \
@@ -17,7 +17,7 @@ RUN "${CONDA_DIR}/envs/${conda_env}/bin/python" -m ipykernel install --user --na
     fix-permissions "/home/${NB_USER}"
 
 # install pycaret full version
-RUN "${CONDA_DIR}/envs/${conda_env}/bin/pip" install pycaret[full]==3.0.0
+RUN "${CONDA_DIR}/envs/${conda_env}/bin/pip" install pycaret[full]>=3.3.2
 
 # prepend conda environment to path
 ENV PATH "${CONDA_DIR}/envs/${conda_env}/bin:${PATH}"

diff --git a/Docker_files/pycaret_slim/Dockerfile b/Docker_files/pycaret_slim/Dockerfile
@@ -4,7 +4,7 @@ FROM jupyter/base-notebook:latest
 
 # name your environment and choose python 3.x version
 ARG conda_env=pycaret
-ARG py_ver=3.8
+ARG py_ver=3.11
 
 # add additional libraries you want mamba to install by listing them below
 RUN mamba create --quiet --yes -p "${CONDA_DIR}/envs/${conda_env}" python=${py_ver} ipython ipykernel && \
@@ -17,7 +17,7 @@ RUN "${CONDA_DIR}/envs/${conda_env}/bin/python" -m ipykernel install --user --na
     fix-permissions "/home/${NB_USER}"
 
 # install pycaret light version
-RUN "${CONDA_DIR}/envs/${conda_env}/bin/pip" install pycaret==3.0.0
+RUN "${CONDA_DIR}/envs/${conda_env}/bin/pip" install pycaret>=3.3.2
 
 
 # prepend conda environment to path

diff --git a/README.md b/README.md
@@ -20,7 +20,7 @@
 | Overview | |
 |---|---|
 | **CI/CD** | ![pytest on push](https://github.com/pycaret/pycaret/workflows/pytest%20on%20push/badge.svg) [![Documentation Status](https://readthedocs.org/projects/pip/badge/?version=stable)](http://pip.pypa.io/en/stable/?badge=stable) |
-| **Code** |  [![!pypi](https://img.shields.io/pypi/v/pycaret?color=orange)](https://pypi.org/project/pycaret/) [![!python-versions](https://img.shields.io/badge/Python-3.9%20%7C%203.10%20%7C%203.11-blue)](https://badge.fury.io/py/pycaret) [![!black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+| **Code** |  [![!pypi](https://img.shields.io/pypi/v/pycaret?color=orange)](https://pypi.org/project/pycaret/) [![!python-versions](https://img.shields.io/badge/Python-3.9%20%7C%203.10%20%7C%203.11%20%7C%203.12-blue)](https://badge.fury.io/py/pycaret) [![!black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
 | **Downloads**| [![Downloads](https://static.pepy.tech/personalized-badge/pycaret?period=week&units=international_system&left_color=grey&right_color=blue&left_text=weekly%20(pypi))](https://pepy.tech/project/pycaret) [![Downloads](https://static.pepy.tech/personalized-badge/pycaret?period=month&units=international_system&left_color=grey&right_color=blue&left_text=monthly%20(pypi))](https://pepy.tech/project/pycaret) [![Downloads](https://static.pepy.tech/personalized-badge/pycaret?period=total&units=international_system&left_color=grey&right_color=blue&left_text=cumulative%20(pypi))](https://pepy.tech/project/pycaret) |
 | **License** | [![License](https://img.shields.io/pypi/l/ansicolortags.svg)](https://img.shields.io/pypi/l/ansicolortags.svg)
 | **Community** | [![Slack](https://img.shields.io/badge/slack-chat-green.svg?logo=slack)](https://join.slack.com/t/pycaret/shared_invite/zt-20gl4zb8k-L~ZQDyi9LtrV4dWxYpLE7A) |
@@ -42,7 +42,7 @@ The design and simplicity of PyCaret are inspired by the emerging role of citize
 
 ## 🌐 Option 1: Install via PyPi
 PyCaret is tested and supported on 64-bit systems with:
-- Python 3.9, 3.10 and 3.11
+- Python 3.9, 3.10, 3.11 and 3.12
 - Ubuntu 16.04 or later
 - Windows 7 or later