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Code generator: use different arrays for constants, computed constants, and algebraic variables #257

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Code generator: use different arrays for constants, computed constants, and algebraic variables

Code generator: use different arrays for constants, computed constants, and algebraic variables #257

Workflow file for this run

.github/workflows/ci.yml at d1c8fb5
name: CI
on:
pull_request:
branches: [ main ]
workflow_dispatch:
env:
BUILDCACHE_ACCURACY: STRICT
BUILDCACHE_COMPRESS_FORMAT: ZSTD
BUILDCACHE_DEBUG: -1
BUILDCACHE_LOG_FILE: ""
jobs:
cpp_python:
name: ${{ matrix.name }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
include:
- name: 'Windows static - C++/Python'
os: windows-latest
bindings_python: ON
build_shared: OFF
set_path: $env:Path="C:\libxml2\bin;C:\zlib\bin;"+$env:Path
additional_cmake_options: -DLIBXML2_INCLUDE_DIR="C:\libxml2\include\libxml2" -DLIBXML2_LIBRARY="C:\libxml2\lib\libxml2.lib" -DZLIB_INCLUDE_DIR="C:\zlib\include" -DZLIB_LIBRARY="C:\zlib\lib\z_dll.lib"
- name: 'Windows shared - C++/Python'
os: windows-latest
bindings_python: ON
build_shared: ON
set_path: $env:Path="C:\libxml2\bin;C:\zlib\bin;"+$env:Path
additional_cmake_options: -DLIBXML2_INCLUDE_DIR="C:\libxml2\include\libxml2" -DLIBXML2_LIBRARY="C:\libxml2\lib\libxml2.lib" -DZLIB_INCLUDE_DIR="C:\zlib\include" -DZLIB_LIBRARY="C:\zlib\lib\z_dll.lib"
- name: 'Linux static - C++'
os: ubuntu-latest
bindings_python: OFF
build_shared: OFF
- name: 'Linux shared - C++/Python'
os: ubuntu-latest
bindings_python: ON
build_shared: ON
- name: 'macOS static - C++ (Intel)'
os: macos-13
bindings_python: OFF
build_shared: OFF
- name: 'macOS shared - C++/Python (Intel)'
os: macos-13
bindings_python: ON
build_shared: ON
- name: 'macOS static - C++ (ARM)'
os: macos-latest
bindings_python: OFF
build_shared: OFF
- name: 'macOS shared - C++/Python (ARM)'
os: macos-latest
bindings_python: ON
build_shared: ON
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install Python (if needed)
if: ${{ matrix.bindings_python == 'ON' }}
uses: actions/setup-python@v5
with:
python-version: '3.13'
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Install buildcache
uses: cscouto/buildcache-action@v1
with:
cache_key: ${{ matrix.os }}-${{ matrix.build_shared }}
- name: Configure MSVC (Windows only)
if: ${{ runner.os == 'Windows' }}
uses: ilammy/msvc-dev-cmd@v1
- name: Install libxml2 (Windows only)
if: ${{ runner.os == 'Windows' }}
run: |
Invoke-WebRequest -UseBasicParsing https://github.com/cellml/gha/releases/download/gha/libxml2.zip -OutFile libxml2.zip
Expand-Archive -LiteralPath libxml2.zip -DestinationPath C:\
- name: Install SWIG (macOS only and if needed)
if: ${{ runner.os == 'macOS' && matrix.bindings_python == 'ON' }}
run: |
brew install swig
- name: Install zlib (Windows only)
if: ${{ runner.os == 'Windows' }}
run: |
Invoke-WebRequest -UseBasicParsing https://github.com/cellml/gha/releases/download/gha/zlib.zip -OutFile zlib.zip
Expand-Archive -LiteralPath zlib.zip -DestinationPath C:\
- name: Configure libCellML
run: |
mkdir build
cd build
${{ matrix.set_path }}
cmake -G Ninja -DBINDINGS_PYTHON=${{ matrix.bindings_python }} -DBUILD_SHARED=${{ matrix.build_shared }} -DCOVERAGE=OFF -DLLVM_COVERAGE=OFF -DMEMCHECK=OFF -DUNIT_TESTS=ON ${{ matrix.additional_cmake_options }} ..
- name: Build libCellML
run: |
cd build
ninja
- name: Unit testing
run: |
cd build
ninja test
javascript:
name: JavaScript
runs-on: macos-latest
strategy:
fail-fast: false
env:
LIBCELLML_WASM_DIR: wasm
LIBXML2_VERSION: 2.9.10
ZLIB_VERSION: 1.2.3
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Install buildcache
uses: cscouto/buildcache-action@v1
- name: Install Emscripten
run: |
brew install --overwrite emscripten
- name: Set up the build directory
run: |
mkdir build
- name: Build zlib
run: |
cd build
ZLIB_BUILD_DIR=zlib-wasm
git clone https://github.com/OpenCMISS-Dependencies/zlib.git -b v${ZLIB_VERSION}
mkdir ${ZLIB_BUILD_DIR}
emcmake cmake -G Ninja -S zlib -B ${ZLIB_BUILD_DIR} -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=~/${LIBCELLML_WASM_DIR} -DBUILD_SHARED_LIBS=OFF
cmake --build ${ZLIB_BUILD_DIR}
cmake --install ${ZLIB_BUILD_DIR}
- name: Build libxml2
run: |
cd build
LIBXML2_BUILD_DIR=libxml2-wasm
git clone https://github.com/OpenCMISS-Dependencies/libxml2.git -b v${LIBXML2_VERSION}
mkdir ${LIBXML2_BUILD_DIR}
emcmake cmake -G Ninja -S libxml2 -B ${LIBXML2_BUILD_DIR} -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=~/${LIBCELLML_WASM_DIR} -DZLIB_DIR=~/${LIBCELLML_WASM_DIR}/lib/cmake/ZLIB-${ZLIB_VERSION} -DBUILD_SHARED_LIBS=OFF -DLIBXML2_WITH_ICONV=OFF -DLIBXML2_WITH_LZMA=OFF -DLIBXML2_WITH_PYTHON=OFF -DLIBXML2_WITH_TESTS=OFF -DLIBXML2_WITH_PROGRAMS=OFF
cmake --build ${LIBXML2_BUILD_DIR}
cmake --install ${LIBXML2_BUILD_DIR}
- name: Build libCellML
run: |
cd build
mkdir ${LIBCELLML_WASM_DIR}
emcmake cmake -G Ninja -S .. -B ${LIBCELLML_WASM_DIR} -DLibXml2_DIR=~/${LIBCELLML_WASM_DIR}/lib/cmake/libxml2-${LIBXML2_VERSION} -DBUILD_TYPE=Release
cmake --build ${LIBCELLML_WASM_DIR}
- name: Unit testing
run: |
cd build
cmake --build ${LIBCELLML_WASM_DIR} --target jest_test
code_formatting:
name: Code formatting
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install ClangFormat
run: |
sudo apt update
sudo apt install clang-format
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Configure libCellML
run: |
mkdir build
cd build
cmake -G Ninja ..
- name: Code formatting
run: |
cd build
ninja test_clang_format
coverage:
name: Code coverage
runs-on: macos-latest
strategy:
fail-fast: false
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Install buildcache
uses: cscouto/buildcache-action@v1
- name: Install LLVM
run: |
brew install --overwrite llvm
echo 'export PATH="/opt/homebrew/opt/llvm/bin:$PATH"' >> ~/.bash_profile
- name: Configure libCellML
run: |
mkdir build
cd build
cmake -G Ninja -DBINDINGS_PYTHON=OFF ..
- name: Code coverage
run: |
cd build
ninja llvm_coverage
if [ `ninja llvm_coverage | grep TOTAL | sed 's/ /\n/g' | grep "100.00%" | wc -l | sed 's/ //g'` -eq 4 ]; then exit 0; else exit 1; fi
memory_leaks:
name: Memory leaks
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Install buildcache
uses: cscouto/buildcache-action@v1
- name: Install Valgrind
run: |
sudo apt update
sudo apt install valgrind
- name: Configure libCellML
run: |
mkdir build
cd build
cmake -G Ninja -DBINDINGS_PYTHON=OFF ..
- name: Memory leaks
run: |
cd build
ninja memcheck
documentation:
name: Documentation
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Check out libCellML
uses: actions/checkout@v4
- name: Install CMake and Ninja
uses: lukka/get-cmake@latest
- name: Install buildcache
uses: cscouto/buildcache-action@v1
- name: Install Doxygen
run: |
sudo apt update
sudo apt install doxygen
- name: Install Sphinx
run: |
pip3 install sphinx
- name: Configure libCellML
run: |
mkdir build
cd build
cmake -G Ninja -DBINDINGS_PYTHON=OFF ..
- name: Documentation
run: |
cd build
ninja docs