Joseph Hughes (Course Organizer)
Derek Wright (Co-organizer)
Quan Gu
Srikeerthana Kuchi
Richard Orton
David Robertson
Sreenu Vattipally
- Login, setup & basic Linux
- NGS/HTS data
- Quality control and read cleaning
- Reference alignment
- Bash file editing & text processing
- Bash conditions & loops
- Introduction to MSA and phylogenetics
- De novo assembly
- De novo quality assessment
- Introduction to plotting in R
- Metagenomics and virus discovery or Alignment for transcriptomics and DE analysis
- K-mer based metagenomics or Gene ontology and pathway analysis in R