included S3 decorators #270
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: cgatcore | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Cache conda | |
| uses: actions/cache@v3 | |
| env: | |
| # Increase this value to reset cache if conda/environments/cgat-core.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('conda/environments/cgat-core.yml') }} | |
| - name: Set installer URL | |
| id: set-installer-url | |
| run: | | |
| if [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | |
| echo "installer-url=https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh" >> $GITHUB_ENV | |
| elif [[ "${{ matrix.os }}" == "macos-latest" ]]; then | |
| echo "installer-url=https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-MacOSX-arm64.sh" >> $GITHUB_ENV | |
| fi | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| installer-url: ${{ env.installer-url }} | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, bioconda, defaults | |
| channel-priority: true | |
| activate-environment: cgat-core | |
| environment-file: conda/environments/cgat-core.yml | |
| - name: Configure Conda Paths | |
| run: echo "/usr/share/miniconda3/condabin" >> $GITHUB_PATH | |
| - name: Show conda | |
| run: | | |
| conda info | |
| conda list | |
| - name: Test | |
| run: | | |
| pip install . | |
| ./all-tests.sh |