Skip to content

feat: fetch published doi if preprint #2154

feat: fetch published doi if preprint

feat: fetch published doi if preprint #2154

Triggered via pull request January 6, 2024 00:31
Status Success
Total duration 38m 22s
Artifacts 5

rdev-update-for-pr.yml

on: pull_request
get_previous_image_digests
20s
get_previous_image_digests
summarize
0s
summarize
Matrix: build_images
seed-wmg-cellguide-rdev
2m 7s
seed-wmg-cellguide-rdev
seed-database-e2e-tests
16s
seed-database-e2e-tests
delete-previous-images
14s
delete-previous-images
functional-test
10m 8s
functional-test
Matrix: run-e2e-tests
e2e-logged-in-test
2m 50s
e2e-logged-in-test
merge-playwright-reports
49s
merge-playwright-reports
e2e-test
3s
e2e-test
Fit to window
Zoom out
Zoom in

Annotations

3 errors, 53 warnings, and 11 notices
[chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types: frontend/tests/features/wheresMyGene/shareLink.test.ts#L313
1) [chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types Error: expect(locator).toBeVisible() Locator: getByText('Ren et al. (2021) Cell') Expected: visible Received: hidden Call log: - expect.toBeVisible with timeout 10000ms - waiting for getByText('Ren et al. (2021) Cell') 311 | 312 | if (item) { > 313 | await expect(page.getByText(item.text)).toBeVisible(); | ^ 314 | } 315 | }); 316 | at forEach (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:313:51) at verifyParameter (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:307:19) at verifyShareLink (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:236:24) at page.page (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:125:9) at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:163:7) at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:123:5
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter: frontend/tests/features/wheresMyGene/landingPageFilter.test.ts#L138
1) [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter Error: expect(received).toBeGreaterThan(expected) Expected: > 107 Received: 107 136 | const numberOfRecordsAfter = await countRecords(page, testId); 137 | > 138 | expect(numberOfRecordsBefore).toBeGreaterThan(numberOfRecordsAfter); | ^ 139 | }); 140 | } 141 | ); at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:138:39
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied: frontend/tests/features/wheresMyGene/landingPageFilter.test.ts#L185
2) [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied Error: expect(locator).toBeVisible() Locator: getByTestId('source-data-badge') Expected: visible Received: hidden Call log: - expect.toBeVisible with timeout 10000ms - waiting for getByTestId('source-data-badge') 183 | }); 184 | const badgeCounter = await page.getByTestId(DATA_SOURCE_BADGE_TEST_ID); > 185 | expect(badgeCounter).toBeVisible(); | ^ 186 | const count = await badgeCounter.innerText(); 187 | expect(parseInt(count)).toBeLessThan(99); 188 | }, at page.page (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:185:30) at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:163:7) at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:175:5
get_previous_image_digests
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_success)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (dataset_submissions)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_failures)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (cellguide_pipeline)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (wmg_processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (frontend)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
deploy-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
delete-previous-images
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
seed-database-e2e-tests
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
seed-wmg-cellguide-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
e2e-tests chromium 5 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 3 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 6 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 2 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 4 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-logged-in-test
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-node@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
e2e-logged-in-test
No files were found with the provided path: frontend/playwright-report/. No artifacts will be uploaded.
e2e-tests chromium 7 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 1 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
e2e-tests chromium 10 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
functional-test
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
🎭 Playwright Run Summary
1 skipped 18 passed (4.9s)
🎭 Playwright Run Summary
1 skipped 27 passed (4.5s)
🎭 Playwright Run Summary
1 skipped 21 passed (4.3s)
🎭 Playwright Run Summary
1 skipped 27 passed (40.9s)
🎭 Playwright Run Summary
1 skipped 42 passed (4.6s)
🎭 Playwright Run Summary
8 passed (1.2m)
🎭 Playwright Run Summary
2 skipped 26 passed (1.4m)
🎭 Playwright Run Summary
1 skipped 27 passed (1.3m)
🎭 Playwright Run Summary
2 skipped 25 passed (4.5m)
🎭 Playwright Run Summary
1 flaky [chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types 1 skipped 25 passed (4.6m)
🎭 Playwright Run Summary
2 flaky [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied 1 skipped 24 passed (4.6m)

Artifacts

Produced during runtime
Name Size
all-blob-reports Expired
8.82 MB
allure-results Expired
10.1 MB
html-report--attempt-1 Expired
10.4 MB
playwright-report chromium 8 of 10 Expired
7.73 MB
playwright-report chromium 9 of 10 Expired
893 KB