feat: fetch published doi if preprint #2154
rdev-update-for-pr.yml
on: pull_request
get_previous_image_digests
20s
summarize
0s
Matrix: build_images
delete-previous-images
14s
functional-test
10m 8s
Matrix: run-e2e-tests
e2e-logged-in-test
2m 50s
Annotations
3 errors, 53 warnings, and 11 notices
[chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types:
frontend/tests/features/wheresMyGene/shareLink.test.ts#L313
1) [chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types
Error: expect(locator).toBeVisible()
Locator: getByText('Ren et al. (2021) Cell')
Expected: visible
Received: hidden
Call log:
- expect.toBeVisible with timeout 10000ms
- waiting for getByText('Ren et al. (2021) Cell')
311 |
312 | if (item) {
> 313 | await expect(page.getByText(item.text)).toBeVisible();
| ^
314 | }
315 | });
316 |
at forEach (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:313:51)
at verifyParameter (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:307:19)
at verifyShareLink (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:236:24)
at page.page (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:125:9)
at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:163:7)
at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/shareLink.test.ts:123:5
|
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter:
frontend/tests/features/wheresMyGene/landingPageFilter.test.ts#L138
1) [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter
Error: expect(received).toBeGreaterThan(expected)
Expected: > 107
Received: 107
136 | const numberOfRecordsAfter = await countRecords(page, testId);
137 |
> 138 | expect(numberOfRecordsBefore).toBeGreaterThan(numberOfRecordsAfter);
| ^
139 | });
140 | }
141 | );
at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:138:39
|
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied:
frontend/tests/features/wheresMyGene/landingPageFilter.test.ts#L185
2) [chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied
Error: expect(locator).toBeVisible()
Locator: getByTestId('source-data-badge')
Expected: visible
Received: hidden
Call log:
- expect.toBeVisible with timeout 10000ms
- waiting for getByTestId('source-data-badge')
183 | });
184 | const badgeCounter = await page.getByTestId(DATA_SOURCE_BADGE_TEST_ID);
> 185 | expect(badgeCounter).toBeVisible();
| ^
186 | const count = await badgeCounter.innerText();
187 | expect(parseInt(count)).toBeLessThan(99);
188 | },
at page.page (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:185:30)
at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:163:7)
at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/wheresMyGene/landingPageFilter.test.ts:175:5
|
get_previous_image_digests
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
get_previous_image_digests
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_success)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_success)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (dataset_submissions)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (dataset_submissions)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_failures)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (upload_failures)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (cellguide_pipeline)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (cellguide_pipeline)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (wmg_processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (wmg_processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (processing)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (frontend)
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
build_images (frontend)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
deploy-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
deploy-rdev
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
delete-previous-images
The following actions uses node12 which is deprecated and will be forced to run on node16: docker/login-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
delete-previous-images
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
seed-database-e2e-tests
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
seed-wmg-cellguide-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
e2e-tests chromium 5 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 3 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 6 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 2 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 4 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-logged-in-test
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-node@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
e2e-logged-in-test
No files were found with the provided path: frontend/playwright-report/. No artifacts will be uploaded.
|
e2e-tests chromium 7 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 1 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
e2e-tests chromium 10 of 10
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
|
functional-test
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
🎭 Playwright Run Summary
1 skipped
18 passed (4.9s)
|
🎭 Playwright Run Summary
1 skipped
27 passed (4.5s)
|
🎭 Playwright Run Summary
1 skipped
21 passed (4.3s)
|
🎭 Playwright Run Summary
1 skipped
27 passed (40.9s)
|
🎭 Playwright Run Summary
1 skipped
42 passed (4.6s)
|
🎭 Playwright Run Summary
8 passed (1.2m)
|
🎭 Playwright Run Summary
2 skipped
26 passed (1.4m)
|
🎭 Playwright Run Summary
1 skipped
27 passed (1.3m)
|
🎭 Playwright Run Summary
2 skipped
25 passed (4.5m)
|
🎭 Playwright Run Summary
1 flaky
[chromium] › tests/features/wheresMyGene/shareLink.test.ts:113:7 › Share link tests › Should generate share link with correct format for all query param types
1 skipped
25 passed (4.6m)
|
🎭 Playwright Run Summary
2 flaky
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:123:11 › Left side bar › Ensure that cell type filter cross-filters with publication-filter
[chromium] › tests/features/wheresMyGene/landingPageFilter.test.ts:172:7 › Left side bar › Data Source Button Badge Counter - Check Visible after filters applied
1 skipped
24 passed (4.6m)
|
Artifacts
Produced during runtime
Name | Size | |
---|---|---|
all-blob-reports
Expired
|
8.82 MB |
|
allure-results
Expired
|
10.1 MB |
|
html-report--attempt-1
Expired
|
10.4 MB |
|
playwright-report chromium 8 of 10
Expired
|
7.73 MB |
|
playwright-report chromium 9 of 10
Expired
|
893 KB |
|