R 3.6.0 additionla packages updated to get a working set of Geographi…

…c packages (PROJ, GDAL etc).
chenggroup · Jul 3, 2019 · 1e96107 · 1e96107
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commit 1e96107
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diff --git a/R-3.6.0_packages_install b/R-3.6.0_packages_install
@@ -23,6 +23,7 @@
 # Updated October 2018 to create ~/.R/Makevars to allow installaion of rstan
 # Updated April 2019 for R 3.5.3 and PROJ.4 6.0.0
 # Updated June 2019 for R 3.6.0, Texinfo 6.6 and TeX Live 2019
+# Further updates to get a working set of Geographic packages (PROJ, GDAL etc) July 2019
 #
 # Using Ian's require function to load modules
 #
@@ -64,7 +65,7 @@ require perl/5.22.0
 require libtool/2.4.6
 require graphicsmagick/1.3.21
 require python2/recommended
-require proj.4/6.0.0
+require proj.4/6.1.0
 require gdal/2.1.4
 require gmt/5.4.5
 require geos/3.5.0/gnu-4.9.2
@@ -134,7 +135,7 @@ R --no-save < $R_input
 # No longer on CRAN - Aug 2014
 # Removed from packages to be built June 2019 as it fails to build with R 3.6.0
 
-# R CMD INSTALL -l $RLIB_MAIN ${LOCALDIR}/NetworkAnalysis_0.3-1.tar.gz
+#   ${LOCALDIR}/NetworkAnalysis_0.3-1.tar.gz
 
 R_input=${LOCALDIR}/R_packages_UCL_4.R
 R --no-save < $R_input

diff --git a/files/R_UCL/R_packages_UCL_5.R b/files/R_UCL/R_packages_UCL_5.R
@@ -123,10 +123,18 @@ install.packages ("psych", lib=mainLib, repos=repros);
 
 install.packages ("rlecuyer", lib=mainLib, repos=repros);
 
+install.packages ("devtools", lib=mainLib, repos=repros);
+
 # More requsts from Political Science
 
+# Install sf from GitHub repository
+
+sfconf <- '--with-proj-api=yes --with-proj-lib=/shared/ucl/apps/PROJ.4/6.1.0/lib --with-proj-share=/shared/ucl/apps/PROJ.4/6.1.0/share/proj PROJ_CPPFLAGS="${PROJ_CPPFLAGS} -DACCEPT_USE_OF_DEPRECATED_PROJ_API_H -DHAVE_PROJ_H"';
+devtools::install_github("r-spatial/sf", configure.args=sfconf);
+
 install.packages ("rgdal", lib=mainLib, repos=repros);
 install.packages ("rgeos", lib=mainLib, repos=repros);
+
 install.packages ("erer", lib=mainLib, repos=repros);
 install.packages ("panelAR", lib=mainLib, repos=repros);
 install.packages ("arm", lib=mainLib, repos=repros);
@@ -159,7 +167,6 @@ install.packages ("png", lib=mainLib, repos=repros);
 install.packages ("TAM", lib=mainLib, repos=repros);
 
 # For Tom O'Grady (t.o'grady@ucl.ac.uk) April 2019
-install.packages ("devtools", lib=mainLib, repos=repros);
 devtools::install_github("jamesdunham/dgo");
 
 # For Kasia Kozdon (k.kozdon.11@ucl.ac.uk) April 2019