resove tangle by hic

chhylp123 · May 1, 2021 · 9c205c8 · 9c205c8
1 parent 9b31d47
commit 9c205c8
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Showing 3 changed files with 877 additions and 247 deletions.
diff --git a/CommandLines.h b/CommandLines.h
@@ -4,7 +4,7 @@
 #include <pthread.h>
 #include <stdint.h>
 
-#define HA_VERSION "0.15.1-r331"
+#define HA_VERSION "0.15.1-r333"
 
 #define VERBOSE 0
 

diff --git a/Overlaps.cpp b/Overlaps.cpp
@@ -12765,20 +12765,27 @@ long long gap_fuzz, bub_label_t* b_mask_t)
     hic_analysis(ug, sg, cov?cov->t_ch:t_ch);
 
 
+
+
+
     char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
-    sprintf(gfa_name, "%s.d_utg.noseq.gfa", output_file_name);
+    sprintf(gfa_name, "%s.clean_d_utg.noseq.gfa", output_file_name);
     FILE* output_file = fopen(gfa_name, "w");
     ma_ug_print_simple(ug, &R_INF, sg, coverage_cut, sources, ruIndex, "utg", output_file);
     fclose(output_file);
     free(gfa_name);
-
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+
+
 
     if(cov) destory_hap_cov_t(&cov);
     if(t_ch) destory_trans_chain(&t_ch);
 
     ma_ug_destroy(ug);
     kv_destroy(new_rtg_edges.a); 
-
+
+
     asg_arc_t* av = NULL;
     uint32_t v, w, k, i, nv;
     for (i = 0; i < d_edges.a.n; i++)