Release 0.9.3
See change log for details.
What's Changed
- Fix endstate validation handling in PointMutationExecutor by @schallerdavid in #866
- Remove hacks now that upstream has updated packages by @mikemhenry in #868
- Removed travis CI config file by @mikemhenry in #871
- Fix naked charge padding by @zhang-ivy in #877
- Fix stochastic failures in RepartitionedHybridTopologyFactory test by @zhang-ivy in #878
- Running examples with GPU using docker container. by @ijpulidos in #874
- Use mamba instead of conda by @mikemhenry in #850
- Test new python versions by @mikemhenry in #880
- Simplify
_construct_atom_map
for protein mutations by @zhang-ivy in #860 - use beta of openeye toolkit by @mikemhenry in #887
- Add GPU testing to our CI by @mikemhenry in #858
- Allow
generate_dipeptide_top_pos_sys
to acceptdemap_CBs
by @zhang-ivy in #892 - add installation instructions to readme by @mikemhenry in #893
- Remove unused argument 'implicitSolvent' from SystemGenerator in tests by @mikemhenry in #894
- Disable CI failure if codecov fails by @mikemhenry in #898
- Only support openmm 7.6 by @mikemhenry in #896
- update CI to test release candidate by @mikemhenry in #787
- Fix box vector handling in topology proposal by @zhang-ivy in #922
- Fix atom masses in vanilla HybridTopologyFactory by @zhang-ivy in #918
- Fix water selection for counterion by @zhang-ivy in #905
- Add scripts to perform automated benchmarking against Open Force Field protein-ligand benchmarks by @ijpulidos in #924
- Update contributors list by @jchodera in #930
- Release/0.9.3 by @mikemhenry in #925
Benchmark Data
-
tyk2 system, using
openff-2.0.0
: -
mcl1 system, using
openff-2.0.0
:
New Contributors
- @schallerdavid made their first contribution in #866
Full Changelog: 0.9.2...0.9.3