add output

outputs/preprocess/2024-03-06/22-53-33/.hydra/config.yaml

@@ -0,0 +1,24 @@
+data:
+  raw: s4e2-train.csv
+incl_test: false
+file_suffix: s4e2-ps
+features:
+  numeric:
+  - Age
+  - Height
+  - Weight
+  - FCVC
+  - NCP
+  - CH2O
+  - FAF
+  - TUE
+  categoric:
+  - Gender
+  - family_history_with_overweight
+  - FAVC
+  - CAEC
+  - SMOKE
+  - SCC
+  - CALC
+  - MTRANS
+target: NObeyesdad

outputs/preprocess/2024-03-06/22-53-33/.hydra/hydra.yaml

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+hydra:
+  run:
+    dir: outputs/${hydra.job.name}/${now:%Y-%m-%d}/${now:%H-%M-%S}
+  sweep:
+    dir: outputs/${hydra.job.name}/multirun
+    subdir: ${hydra.job.override_dirname}/${now:%Y-%m-%d}/${now:%H-%M-%S}
+  launcher:
+    _target_: hydra_plugins.hydra_joblib_launcher.joblib_launcher.JoblibLauncher
+    n_jobs: -1
+    backend: null
+    prefer: processes
+    require: null
+    verbose: 0
+    timeout: null
+    pre_dispatch: 2*n_jobs
+    batch_size: auto
+    temp_folder: null
+    max_nbytes: null
+    mmap_mode: r
+  sweeper:
+    _target_: hydra._internal.core_plugins.basic_sweeper.BasicSweeper
+    max_batch_size: null
+    params: null
+  help:
+    app_name: ${hydra.job.name}
+    header: '${hydra.help.app_name} is powered by Hydra.
+
+      '
+    footer: 'Powered by Hydra (https://hydra.cc)
+
+      Use --hydra-help to view Hydra specific help
+
+      '
+    template: '${hydra.help.header}
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (group=option)
+
+
+      $APP_CONFIG_GROUPS
+
+
+      == Config ==
+
+      Override anything in the config (foo.bar=value)
+
+
+      $CONFIG
+
+
+      ${hydra.help.footer}
+
+      '
+  hydra_help:
+    template: 'Hydra (${hydra.runtime.version})
+
+      See https://hydra.cc for more info.
+
+
+      == Flags ==
+
+      $FLAGS_HELP
+
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (For example, append hydra/job_logging=disabled
+      to command line)
+
+
+      $HYDRA_CONFIG_GROUPS
+
+
+      Use ''--cfg hydra'' to Show the Hydra config.
+
+      '
+    hydra_help: ???
+  hydra_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][HYDRA] %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+    root:
+      level: INFO
+      handlers:
+      - console
+    loggers:
+      logging_example:
+        level: DEBUG
+    disable_existing_loggers: false
+  job_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][%(name)s][%(levelname)s] - %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+      file:
+        class: logging.FileHandler
+        formatter: simple
+        filename: ${hydra.runtime.output_dir}/${hydra.job.name}.log
+    root:
+      level: INFO
+      handlers:
+      - console
+      - file
+    disable_existing_loggers: false
+  env: {}
+  mode: RUN
+  searchpath: []
+  callbacks: {}
+  output_subdir: .hydra
+  overrides:
+    hydra:
+    - hydra.mode=RUN
+    task: []
+  job:
+    name: preprocess
+    chdir: null
+    override_dirname: ''
+    id: ???
+    num: ???
+    config_name: preprocess
+    env_set: {}
+    env_copy: []
+    config:
+      override_dirname:
+        kv_sep: '='
+        item_sep: ','
+        exclude_keys: []
+  runtime:
+    version: 1.3.2
+    version_base: '1.3'
+    cwd: /Users/chrissantiago/Dropbox/GitHub/scarf
+    config_sources:
+    - path: hydra.conf
+      schema: pkg
+      provider: hydra
+    - path: /Users/chrissantiago/Dropbox/GitHub/scarf/scarf/conf
+      schema: file
+      provider: main
+    - path: ''
+      schema: structured
+      provider: schema
+    output_dir: /Users/chrissantiago/Dropbox/GitHub/scarf/outputs/preprocess/2024-03-06/22-53-33
+    choices:
+      hydra: eval
+      hydra/env: default
+      hydra/callbacks: null
+      hydra/job_logging: default
+      hydra/hydra_logging: default
+      hydra/hydra_help: default
+      hydra/help: default
+      hydra/sweeper: basic
+      hydra/launcher: joblib
+      hydra/output: default
+  verbose: false

outputs/preprocess/2024-03-06/22-53-33/.hydra/overrides.yaml

@@ -0,0 +1 @@
+[]

outputs/scarf-encoder/train/2024-03-06/21-10-15/.hydra/config.yaml

@@ -0,0 +1,85 @@
+data:
+  batch_size: 128
+  n_workers: 10
+  name: obesity
+  train:
+    _target_: torch.utils.data.DataLoader
+    dataset:
+      _target_: scarf.data.CSVDataset
+      file_path: data/train-s4e2-ps.csv
+    batch_size: ${data.batch_size}
+    shuffle: true
+    num_workers: ${data.n_workers}
+  valid:
+    _target_: torch.utils.data.DataLoader
+    dataset:
+      _target_: scarf.data.StaticDataset
+    batch_size: ${data.batch_size}
+    shuffle: false
+    num_workers: ${data.n_workers}
+model:
+  optimizer:
+    _target_: torch.optim.Adam
+    _partial_: true
+    lr: 0.001
+    betas:
+    - 0.9
+    - 0.999
+    weight_decay: 0
+  scheduler:
+    _target_: torch.optim.lr_scheduler.ReduceLROnPlateau
+    _partial_: true
+    mode: min
+    factor: 0.1
+    patience: 10
+  name: scarf-encoder
+  nn:
+    _target_: scarf.models.scarf.SCARFEncoder
+    dim_hidden: 256
+    n_encoder_layers: 4
+    n_projection_layers: 2
+    p_mask: 0.6
+    loss_func:
+      _target_: pytorch_metric_learning.losses.SelfSupervisedLoss
+      loss:
+        _target_: pytorch_metric_learning.losses.NTXentLoss
+        temperature: 1.0
+trainer:
+  _target_: pytorch_lightning.Trainer
+  max_epochs: 300
+  accelerator: mps
+  devices: 1
+  logger:
+    _target_: pytorch_lightning.loggers.WandbLogger
+    project: scarf
+    name: null
+    id: null
+    group: null
+    job_type: null
+    save_dir: ${hydra:runtime.output_dir}
+    log_model: true
+    tags: ${tags}
+  check_val_every_n_epoch: 10
+callbacks:
+  model_summary:
+    _target_: pytorch_lightning.callbacks.RichModelSummary
+  progress_bar:
+    _target_: pytorch_lightning.callbacks.RichProgressBar
+    refresh_rate: 5
+    leave: true
+  early_stopping:
+    _target_: pytorch_lightning.callbacks.EarlyStopping
+    monitor: valid-loss
+    min_delta: 0.001
+    patience: 3
+    check_on_train_epoch_end: false
+  model_checkpoint:
+    _target_: pytorch_lightning.callbacks.ModelCheckpoint
+    dirpath: ${hydra:runtime.output_dir}/checkpoints
+    monitor: train-loss
+    save_top_k: 1
+    save_on_train_epoch_end: true
+seed: 43
+tags:
+- ${data.name}
+- ${model.name}