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Release v0.11.0 #90

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merged 3 commits into from
Jan 22, 2024
Merged

Release v0.11.0 #90

merged 3 commits into from
Jan 22, 2024

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nokara26
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This release includes following PR.
#89

@nokara26 nokara26 self-assigned this Jan 22, 2024
README.md Outdated
Comment on lines 34 to 35
We fixed following `varity.vcf-to-hgvs` implementation.
It is inconvenient to throw an exception in `vcf-variant->protein-hgvs` when variants overlapping a boundary of exon/intron even if `vcf-variant->coding-dna-hgvs` succeed in `vcf-to-hgvs.vcf-variant->hgvs`. So we changed to return nil.
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Suggested change
We fixed following `varity.vcf-to-hgvs` implementation.
It is inconvenient to throw an exception in `vcf-variant->protein-hgvs` when variants overlapping a boundary of exon/intron even if `vcf-variant->coding-dna-hgvs` succeed in `vcf-to-hgvs.vcf-variant->hgvs`. So we changed to return nil.
We fixed the `varity.vcf-to-hgvs` implementation.
It is confusing to throw the exception in `vcf-variant->protein-hgvs` when a variant overlaps the exon-intron boundaries, even if coding DNA HGVS is available. So we changed the behavior to return protein HGVS as `nil`.

CHANGELOG.md Outdated

### Fixed

- Return protein-hgvs nil when variants overlapping exon/intron boundaries. [#89](https://github.com/chrovis/varity/pull/89)
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Suggested change
- Return protein-hgvs nil when variants overlapping exon/intron boundaries. [#89](https://github.com/chrovis/varity/pull/89)
- Return protein HGVS as `nil` if a variant overlaps exon-intron boundaries. [#89](https://github.com/chrovis/varity/pull/89)

@nokara26 nokara26 requested a review from federkasten January 22, 2024 07:41
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LGTM

@totakke totakke merged commit 407aa14 into master Jan 22, 2024
@totakke totakke deleted the release/v0.11.0 branch January 22, 2024 10:27
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totakke commented Jan 22, 2024

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3 participants