MPox specification package v8.5.5

Contents:

• Field and Term Reference Guides
  • International 8.5.5
  • Canadian 7.5.5
• Curation Standard Operating Procedure (SOP)
  • International 8.5.5
  • Canadian 7.5.5
• New Term Request Standard Operating Procedure (SOP) 1.1

Implementation template can be found at pathogen-genomics-package v5.5.0

Updates:

Field	Change
depth of coverage	Reinstate field in Mpox template
depth of coverage threshold	Reinstate field in Mpox template
breadth of coverage	Add field to Mpox and Mpox international
assay target name	Update field ID

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Details can be found under release notes issue #9

MPox specification package v7.5.5

Contents:

• Field and Term Reference Guides
  • International 7.5.5
  • Canadian 6.5.5
• Curation Standard Operating Procedure (SOP)
  • International 7.5.5
  • Canadian 6.5.5
• New Term Request Standard Operating Procedure (SOP) 1.1

Updates

Field	Change
assay target name 1	new field
assay target details 1	new field
gene symbol 1	new field, new picklist IDs
assay target name 2	new field
assay target details 2	new field
gene symbol 2	new field, new picklist IDs
assay target name 3	new field
assay target details 3	new field
gene symbol 3	new field, new picklist IDs

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Details can be found under release notes issue #6

MPox specification package v6.4.4

Contents:

• Field and Term Reference Guides
  • International 6.4.4
  • Canadian 5.4.4
• Curation Standard Operating Procedure (SOP)
  • International 6.4.4
  • Canadian 5.4.4
• New Term Request Standard Operating Procedure (SOP) 1.1

Updates

Field	Change
INSDC sequence read accession	new field
INSDC sequence assembly accession	new field
assay target name	new field
genome sequence file name	new field
genome sequence file path	new field
experimental specimen role type	new field

Updated curation guidance to support addition of new fields.

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Details can be found under release notes issue#1