Changes to README before releasing 0.1.0 (#87)

* Small changes to README

* Update histogram gif

* Create LICENSE

* Remove GISAID data and update README for license

* Fix bug uncommitted cidgoh logo

* wip

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Centre for Infectious Disease and One Health
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -16,7 +16,7 @@ functional impact, based on Dash & Plotly frameworks.
 
 ### 1. Clone the repository and its submodules
 
-`$ git clone git@github.com:cidgoh/COVID-MVP.git --recurse-submodules`
+`$ git clone git@github.com:cidgoh/COVID-MVP.git`
 
 ### 2. Create a virtual environment
 
@@ -110,10 +110,6 @@ frequency.
 The clade defining switch allows you to filter in and out heatmap cells
 corresponding to non-clade defining mutations.
 
-![editing_viz]
-
-[editing_viz]: screenshots/editing_viz.gif
-
 ## Submodules
 
 ### [nf-ncov-voc][nf-ncov-voc]
@@ -151,9 +147,19 @@ isgill93@student.ubc.ca.
 
 William Hsiao, Gary Van Domselaar, and Paul Gordon
 
+The results here are in whole or part based upon data hosted at the Canadian
+VirusSeq Data Portal: https://virusseq-dataportal.ca/. We wish to acknowledge
+the following organisations/laboratories for contributing data to the Portal:
+Canadian Public Health Laboratory Network (CPHLN), CanCOGGeN VirusSeq,
+Saskatchewan - Roy Romanow Provincial Laboratory(RRPL), Nova Scotia Health
+Authority, Alberta ProvLab North(APLN), Queen's University / Kingston Health
+Sciences Centre, National Microbiology Laboratory(NML), BCCDC Public Health
+Laboratory, Public Health Ontario(PHO), Newfoundland and Labrador - Eastern
+Health, Unity Health Toronto, Ontario Institute for Cancer Research(OICR),
+Manitoba Cadham Provincial Laborator, and Manitoba Cadham Provincial Laboratory.
+
 ## License
 
-This project currently hosts data that cannot be publicly shared, so we are
-currently retaining default copyright laws. We retain all rights to our source
-code and no one may reproduce, distribute, or create derivative works from our
-work without explicit permission.
+[MIT][4]
+
+[4]: LICENSE