update module docker containers

cidgoh · Dec 16, 2024 · 4f8583a · 4f8583a
1 parent 2adca4c
commit 4f8583a
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Showing 8 changed files with 9 additions and 9 deletions.
diff --git a/modules/local/convertgff2json.nf b/modules/local/convertgff2json.nf
@@ -8,7 +8,7 @@ process CONVERTGFFTOJSON {
     conda "conda-forge::pandas=1.4.3"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
         ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-        : 'amancevice/pandas:1.4.3'}"
+        : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/local/extractMetadata.nf b/modules/local/extractMetadata.nf
@@ -3,7 +3,7 @@ process EXTRACTMETADATA {
     conda "conda-forge::pandas=1.4.3"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
         ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-        : 'amancevice/pandas:1.4.3'}"
+        : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
     input:
     tuple val(meta), path(metadata)

diff --git a/modules/local/extractVariants.nf b/modules/local/extractVariants.nf
@@ -3,7 +3,7 @@ process EXTRACTVARIANTS {
       conda "conda-forge::pandas=1.4.3"
       container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
             ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-            : 'amancevice/pandas:1.4.3'}"
+            : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
       input:
       tuple val(meta), path(variants)

diff --git a/modules/local/harmonize_metadata.nf b/modules/local/harmonize_metadata.nf
@@ -3,8 +3,8 @@ process METADATA_HARMONIZER {
 
     conda "conda-forge::pandas=1.4.3"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
-        ? 'docker://pandas/pandas:pip-all'
-        : 'pandas/pandas:pip-all'}"
+        ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
+        : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
     input:
     tuple val(meta), path(metadata)

diff --git a/modules/local/merge_classification_report.nf b/modules/local/merge_classification_report.nf
@@ -3,7 +3,7 @@ process MERGE_CLASSIFFICATION_METADATA {
     conda "conda-forge::pandas=1.4.3"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
         ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-        : 'amancevice/pandas:1.4.3'}"
+        : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
     input:
     tuple val(meta), path(metadata)

diff --git a/modules/local/splitmutations_gvf.nf b/modules/local/splitmutations_gvf.nf
@@ -5,7 +5,7 @@ process NCOVSPLITMUTATIONSGVF {
   conda "conda-forge::pandas=1.4.3"
   container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
     ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-    : 'amancevice/pandas:1.4.3'}"
+    : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
   input:
   tuple val(meta), path(gvf)

diff --git a/modules/local/splitmutations_pokay.nf b/modules/local/splitmutations_pokay.nf
@@ -5,7 +5,7 @@ process NCOVSPLITMUTATIONSPOKAY {
   conda "conda-forge::pandas=1.4.3"
   container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
     ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-    : 'amancevice/pandas:1.4.3'}"
+    : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
   input:
   tuple val(meta), path(annotations)

diff --git a/modules/local/vcftogvf.nf b/modules/local/vcftogvf.nf
@@ -3,7 +3,7 @@ process VCFTOGVF {
   conda "conda-forge::pandas=1.4.3"
   container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
     ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3'
-    : 'amancevice/pandas:1.4.3'}"
+    : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}"
 
   input:
   tuple val(meta), path(vcf)