update workflow

cidgoh · Dec 16, 2024 · dce1f37 · dce1f37
1 parent fc4a5e9
commit dce1f37
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/nextflow_CI.yml b/.github/workflows/nextflow_CI.yml
@@ -34,4 +34,4 @@ jobs:
 
       - name: Run pipeline test (alternative)
         run: |
-          nextflow run main.nf -profile docker --prefix "covidmvp-$(date +%Y-%m-%d)" -params-file covidmvp_clinical_params.yaml
+          nextflow run main.nf -profile singularity --prefix "covidmvp-$(date +%Y-%m-%d)" -params-file covidmvp_clinical_params.yaml