Use of SteadyCom for synthetic microbial consortia analysis

• Repository Information

This repository contains the script used for the evaluation of a hypothetical four-member consortia based on auxotrophic strains of E. coli using an updated GEM(_i_ML1515) and figures that accompany the technical report for this method for the course Advanced Technologies for Bioscience.

This repository is administered by Cheewin Kittikunapong, Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.

Dependencies

Recommended Software:

• A functional Matlab installation (MATLAB 7.3 or higher)
• COBRA Toolbox
• libSBML MATLAB API (version 5.16.0 is recommended)
• IBM ILOG Cplex