[WIP] build package; add pymol Contour Plots#2
Open
JenkeScheen wants to merge 15 commits intoclhaga:mainfrom
Open
[WIP] build package; add pymol Contour Plots#2JenkeScheen wants to merge 15 commits intoclhaga:mainfrom
JenkeScheen wants to merge 15 commits intoclhaga:mainfrom
Conversation
Owner
|
As long as it maintains the original functionality as well (due to it being in the publication), it can be merged. Interested to see if you can get it working correctly in Pymol. I always had issues with the plotting when I tried to do it given the coordinates are different. Converting back from a linear vector to Pymol 3D space never worked properly for me. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Hi @clhaga, thanks for this work! We're building out an API-ified version of this package so that we can test it out internally. In addition to extending the CLI, making some components in the workflow more object-oriented and adding a test suite, we'll make the Contour plots' output be PyMOL session files so users can interactively interrogate the contours given any incoming structural data.
If this PR is of interest I'm happy to merge it in once it's reached MVP. If not I'll close it and continue on our fork.